Trbv28 Pseudogene Detail

Summary

• Symbol
  Trbv28
• Name
  T cell receptor beta variable 28

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009971
  NCBI Gene: 100124694
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:41243821-41244084 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009971	pseudogenic gene segment	Chr6:41243631-41244084 (+)
129S1/SvImJ	ENSMUSG00200046340	pseudogenic gene segment	Chr6:38301695-38301958 (+)
A/J	ENSMUSG00195043178	pseudogenic gene segment	Chr6:38271361-38271624 (+)
AKR/J	ENSMUSG00220009776	pseudogenic gene segment	Chr6:37872164-37872427 (+)
BALB/cJ	ENSMUSG00180047478	pseudogenic gene segment	Chr6:38399748-38400011 (+)
C3H/HeJ	ENSMUSG00175049408	pseudogenic gene segment	Chr6:38226886-38227149 (+)
C57BL/6NJ	ENSMUSG00215047935	pseudogenic gene segment	Chr6:38325559-38325822 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002288	pseudogenic gene segment	Chr6:35803350-35803612 (+)
CAST/EiJ	ENSTCUG00005038386	pseudogenic gene segment	Chr6:37797656-37797919 (+)
CBA/J	ENSMUSG00210052211	pseudogenic gene segment	Chr6:38278631-38278894 (+)
DBA/2J	ENSMUSG00185049346	pseudogenic gene segment	Chr6:38381133-38381396 (+)
FVB/NJ	ENSMUSG00205050732	pseudogenic gene segment	Chr6:38245741-38246004 (+)
JF1/MsJ	ENSUMUG00000026424	pseudogenic gene segment	Chr6:37992628-37992891 (+)
LP/J	ENSMUSG00230043571	pseudogenic gene segment	Chr6:39304827-39305090 (+)
NOD/ShiLtJ	ENSMUSG00190050347	pseudogenic gene segment	Chr6:38170587-38170850 (+)
NZO/HlLtJ	ENSMUSG00225020487	pseudogenic gene segment	Chr6:41287477-41287740 (+)
PWK/PhJ	ENSLUMG00010048513	pseudogenic gene segment	Chr6:37770045-37770308 (+)
SPRET/EiJ	ENSMSPG00010033622	pseudogenic gene segment	Chr6:38528257-38528520 (+)
WSB/EiJ	ENSIUOG00005034952	pseudogenic gene segment	Chr6:38499147-38499410 (+)

Homology

• Gene Tree
  Trbv28
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000104326 (Evidence)
• NCBI Gene
  100124694

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104326	Ensembl Gene Model | MGI Sequence Detail	264	C57BL/6J
transcript	ENSMUST00000192804	Ensembl | MGI Sequence Detail	264	Not Applicable

Other
Accession IDs

MGI:7538963, MGI:7611843

References

• Summaries
  All 6
• Earliest
  J:67100 Chen F, et al., Differential transcriptional regulation of individual TCR Vbeta segments before gene rearrangement. J Immunol. 2001 Feb 1;166(3):1771-80