Trbv27 Pseudogene Detail

Summary

• Symbol
  Trbv27
• Name
  T cell receptor beta variable 27

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009970
  NCBI Gene: 100124693
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:41235237-41235513 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009970	pseudogenic gene segment	Chr6:41235055-41235513 (+)
129S1/SvImJ	ENSMUSG00200046327	pseudogenic gene segment	Chr6:38293113-38293389 (+)
A/J	ENSMUSG00195043164	pseudogenic gene segment	Chr6:38262780-38263056 (+)
AKR/J	ENSMUSG00220009774	pseudogenic gene segment	Chr6:37863584-37863860 (+)
BALB/cJ	ENSMUSG00180047464	pseudogenic gene segment	Chr6:38391165-38391441 (+)
C3H/HeJ	ENSMUSG00175049397	pseudogenic gene segment	Chr6:38218308-38218584 (+)
C57BL/6NJ	ENSMUSG00215047923	pseudogenic gene segment	Chr6:38316973-38317249 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002287	pseudogenic gene segment	Chr6:35795418-35796074 (+)
CAST/EiJ	ENSTCUG00005035788	pseudogenic gene segment	Chr6:37788673-37789329 (+)
CBA/J	ENSMUSG00210052207	pseudogenic gene segment	Chr6:38270051-38270327 (+)
DBA/2J	ENSMUSG00185049329	pseudogenic gene segment	Chr6:38372552-38372828 (+)
FVB/NJ	ENSMUSG00205049713	pseudogenic gene segment	Chr6:38236834-38237490 (+)
JF1/MsJ	ENSUMUG00000024598	pseudogenic gene segment	Chr6:37983601-37984257 (+)
LP/J	ENSMUSG00230043628	pseudogenic gene segment	Chr6:39296247-39296523 (+)
NOD/ShiLtJ	ENSMUSG00190050333	pseudogenic gene segment	Chr6:38162001-38162277 (+)
NZO/HlLtJ	ENSMUSG00225020566	pseudogenic gene segment	Chr6:41278893-41279169 (+)
PWK/PhJ	ENSLUMG00010048744	pseudogenic gene segment	Chr6:37761018-37761674 (+)
SPRET/EiJ	ENSMSPG00010030736	pseudogenic gene segment	Chr6:38519354-38520010 (+)
WSB/EiJ	ENSIUOG00005033000	pseudogenic gene segment	Chr6:38490185-38490841 (+)

Homology

• Gene Tree
  Trbv27
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000104254 (Evidence)
• NCBI Gene
  100124693

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104254	Ensembl Gene Model | MGI Sequence Detail	277	C57BL/6J
transcript	ENSMUST00000193711	Ensembl | MGI Sequence Detail	277	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:67100 Chen F, et al., Differential transcriptional regulation of individual TCR Vbeta segments before gene rearrangement. J Immunol. 2001 Feb 1;166(3):1771-80