Trbv25 Pseudogene Detail

Summary

• Symbol
  Trbv25
• Name
  T cell receptor beta variable 25

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009969
  NCBI Gene: 100124690
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:41198865-41199137 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009969	pseudogenic gene segment	Chr6:41198608-41199144 (+)
129S1/SvImJ	ENSMUSG00200047319	pseudogenic gene segment	Chr6:38256750-38257022 (+)
A/J	ENSMUSG00195042340	pseudogenic gene segment	Chr6:38226407-38226679 (+)
AKR/J	ENSMUSG00220009645	pseudogenic gene segment	Chr6:37827211-37827483 (+)
BALB/cJ	ENSMUSG00180046665	pseudogenic gene segment	Chr6:38354812-38355084 (+)
C3H/HeJ	ENSMUSG00175048789	pseudogenic gene segment	Chr6:38181942-38182214 (+)
C57BL/6NJ	ENSMUSG00215048314	pseudogenic gene segment	Chr6:38280597-38280869 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002286	pseudogenic gene segment	Chr6:35768099-35768371 (+)
CAST/EiJ	ENSTCUG00005037062	pseudogenic gene segment	Chr6:37752974-37753246 (+)
CBA/J	ENSMUSG00210052169	pseudogenic gene segment	Chr6:38233684-38233956 (+)
DBA/2J	ENSMUSG00185050123	pseudogenic gene segment	Chr6:38336187-38336459 (+)
FVB/NJ	ENSMUSG00205051149	pseudogenic gene segment	Chr6:38204522-38205157 (+)
JF1/MsJ	ENSUMUG00000028155	pseudogenic gene segment	Chr6:37950798-37951065 (+)
LP/J	ENSMUSG00230043517	pseudogenic gene segment	Chr6:39259886-39260158 (+)
NOD/ShiLtJ	ENSMUSG00190048970	pseudogenic gene segment	Chr6:38125637-38125909 (+)
NZO/HlLtJ	ENSMUSG00225020406	pseudogenic gene segment	Chr6:41242529-41242801 (+)
PWK/PhJ	ENSLUMG00010046733	pseudogenic gene segment	Chr6:37722102-37722369 (+)
SPRET/EiJ	ENSMSPG00010031003	pseudogenic gene segment	Chr6:38473368-38473640 (+)
WSB/EiJ	ENSIUOG00005036197	pseudogenic gene segment	Chr6:38453848-38454120 (+)

Homology

• Gene Tree
  Trbv25
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000104473 (Evidence)
• NCBI Gene
  100124690

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104473	Ensembl Gene Model | MGI Sequence Detail	273	C57BL/6J
transcript	ENSMUST00000194700	Ensembl | MGI Sequence Detail	273	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:67100 Chen F, et al., Differential transcriptional regulation of individual TCR Vbeta segments before gene rearrangement. J Immunol. 2001 Feb 1;166(3):1771-80