Trbv18 Pseudogene Detail

Summary

• Symbol
  Trbv18
• Name
  T cell receptor beta variable 18

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009967
  NCBI Gene: 100124682
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:41152249-41152542 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009967	pseudogenic gene segment	Chr6:41152071-41152542 (+)
129S1/SvImJ	ENSMUSG00200047235	pseudogenic gene segment	Chr6:38210097-38210390 (+)
A/J	ENSMUSG00195045251	pseudogenic gene segment	Chr6:38179776-38180069 (+)
AKR/J	ENSMUSG00220009944	pseudogenic gene segment	Chr6:37784993-37785286 (+)
BALB/cJ	ENSMUSG00180046154	pseudogenic gene segment	Chr6:38308193-38308486 (+)
C3H/HeJ	ENSMUSG00175048667	pseudogenic gene segment	Chr6:38135286-38135579 (+)
C57BL/6NJ	ENSMUSG00215048132	pseudogenic gene segment	Chr6:38233981-38234274 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002283	pseudogenic gene segment	Chr6:35723070-35723354 (+)
CAST/EiJ	ENSTCUG00005036151	pseudogenic gene segment	Chr6:37711463-37711756 (+)
CBA/J	ENSMUSG00210052092	pseudogenic gene segment	Chr6:38187031-38187324 (+)
DBA/2J	ENSMUSG00185050730	pseudogenic gene segment	Chr6:38289537-38289830 (+)
FVB/NJ	ENSMUSG00205049678	pseudogenic gene segment	Chr6:38163453-38163746 (+)
JF1/MsJ	ENSUMUG00000025354	pseudogenic gene segment	Chr6:37908188-37908481 (+)
LP/J	ENSMUSG00230043352	pseudogenic gene segment	Chr6:39213240-39213533 (+)
NOD/ShiLtJ	ENSMUSG00190048479	pseudogenic gene segment	Chr6:38079012-38079305 (+)
NZO/HlLtJ	ENSMUSG00225020134	pseudogenic gene segment	Chr6:41195909-41196202 (+)
PWK/PhJ	ENSLUMG00010048736	pseudogenic gene segment	Chr6:37680123-37680416 (+)
SPRET/EiJ	ENSMSPG00010033259	pseudogenic gene segment	Chr6:38421692-38421985 (+)
WSB/EiJ	ENSIUOG00005035933	pseudogenic gene segment	Chr6:38407108-38407401 (+)

Homology

• Gene Tree
  Trbv18
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000102409 (Evidence)
• NCBI Gene
  100124682

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102409	Ensembl Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	ENSMUST00000194256	Ensembl | MGI Sequence Detail	294	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:67100 Chen F, et al., Differential transcriptional regulation of individual TCR Vbeta segments before gene rearrangement. J Immunol. 2001 Feb 1;166(3):1771-80