Trbv9 Pseudogene Detail

Summary

• Symbol
  Trbv9
• Name
  T cell receptor beta variable 9

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009965
  NCBI Gene: 100124665
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:41064933-41065222 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009965	pseudogenic gene segment	Chr6:41064925-41065222 (+)
129S1/SvImJ	ENSMUSG00200047880	pseudogenic gene segment	Chr6:38122768-38123057 (+)
A/J	ENSMUSG00195044564	pseudogenic gene segment	Chr6:38092438-38092727 (+)
AKR/J	ENSMUSG00220009062	pseudogenic gene segment	Chr6:37697665-37697954 (+)
BALB/cJ	ENSMUSG00180046213	pseudogenic gene segment	Chr6:38220861-38221150 (+)
C3H/HeJ	ENSMUSG00175050283	pseudogenic gene segment	Chr6:38047976-38048265 (+)
C57BL/6NJ	ENSMUSG00215047953	pseudogenic gene segment	Chr6:38146633-38146922 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002280	pseudogenic gene segment	Chr6:35629996-35630269 (+)
CAST/EiJ	ENSTCUG00005037817	pseudogenic gene segment	Chr6:37615846-37616135 (+)
CBA/J	ENSMUSG00210052449	pseudogenic gene segment	Chr6:38099733-38100022 (+)
DBA/2J	ENSMUSG00185048636	pseudogenic gene segment	Chr6:38202214-38202503 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000024846	pseudogenic gene segment	Chr6:37819300-37819589 (+)
LP/J	ENSMUSG00230043896	pseudogenic gene segment	Chr6:39125923-39126212 (+)
NOD/ShiLtJ	ENSMUSG00190050455	pseudogenic gene segment	Chr6:37991689-37991978 (+)
NZO/HlLtJ	ENSMUSG00225020859	pseudogenic gene segment	Chr6:41108598-41108887 (+)
PWK/PhJ	ENSLUMG00010046438	pseudogenic gene segment	Chr6:37581134-37581423 (+)
SPRET/EiJ	ENSMSPG00010032783	pseudogenic gene segment	Chr6:38327528-38327817 (+)
WSB/EiJ	ENSIUOG00005034291	pseudogenic gene segment	Chr6:38320908-38321197 (+)

Homology

• Gene Tree
  Trbv9
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104198 (Evidence)
• NCBI Gene
  100124665

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104198	Ensembl Gene Model | MGI Sequence Detail	290	C57BL/6J
transcript	ENSMUST00000194494	Ensembl | MGI Sequence Detail	290	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:67100 Chen F, et al., Differential transcriptional regulation of individual TCR Vbeta segments before gene rearrangement. J Immunol. 2001 Feb 1;166(3):1771-80