Traj47 Gene Detail

Summary

• Symbol
  Traj47
• Name
  T cell receptor alpha joining 47

• Feature Type
  gene segment
• IDs
  MGI:5009961
  NCBI Gene: 100124341
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54409259-54409313 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009961	gene segment	Chr14:54409257-54409313 (+)
129S1/SvImJ	ENSMUSG00200042866	gene segment	Chr14:43001585-43001641 (+)
A/J	ENSMUSG00195038632	gene segment	Chr14:43225855-43225911 (+)
AKR/J	ENSMUSG00220031895	gene segment	Chr14:42553785-42553841 (+)
BALB/cJ	ENSMUSG00180053593	gene segment	Chr14:42849624-42849680 (+)
C3H/HeJ	ENSMUSG00175051330	gene segment	Chr14:44532065-44532121 (+)
C57BL/6NJ	ENSMUSG00215050935	gene segment	Chr14:42731552-42731608 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002138	gene segment	Chr14:45604879-45604935 (+)
CAST/EiJ	ENSTCUG00005048992	gene segment	Chr14:44528330-44528386 (+)
CBA/J	ENSMUSG00210045952	gene segment	Chr14:43212624-43212680 (+)
DBA/2J	ENSMUSG00185055076	gene segment	Chr14:48253278-48253334 (+)
FVB/NJ	ENSMUSG00205047985	gene segment	Chr14:42595547-42595603 (+)
JF1/MsJ	ENSUMUG00000055438	gene segment	Chr14:59511765-59511821 (+)
LP/J	ENSMUSG00230052958	gene segment	Chr14:60367582-60367638 (+)
NOD/ShiLtJ	ENSMUSG00190048182	gene segment	Chr14:42956367-42956423 (+)
NZO/HlLtJ	ENSMUSG00225051831	gene segment	Chr14:50665672-50665728 (+)
PWK/PhJ	ENSLUMG00010051556	gene segment	Chr14:42435683-42435739 (+)
SPRET/EiJ	ENSMSPG00010049369	gene segment	Chr14:45826344-45826400 (+)
WSB/EiJ	ENSIUOG00005048081	gene segment	Chr14:42427383-42427439 (+)

Homology

• Gene Tree
  Traj47
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj47
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000105216 (Evidence)
• NCBI Gene
  100124341

Representative Sequences			Length	Strain/Species
genomic	100124341	NCBI Gene Model | MGI Sequence Detail	55	C57BL/6J
polypeptide	A0A0G2JDH7	UniProt | EBI | MGI Sequence Detail	19	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 17

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:101719 Khor B, et al., Chromosomal excision of TCRdelta chain genes is dispensable for alphabeta T cell lineage commitment. Int Immunol. 2005 Mar;17(3):225-32

TSS for Traj47:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125555	Chr14:54409032-54409039 (+)	-223 bp
Tssr125556	Chr14:54409257-54409268 (+)	4 bp