Trav22 Pseudogene Detail

Summary

• Symbol
  Trav22
• Name
  T cell receptor alpha variable 22

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009957
  NCBI Gene: 100101941
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54164435-54165052 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009957	pseudogenic gene segment	Chr14:54164435-54165052 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002621	pseudogenic gene segment	Chr14:47864813-47865431 (+)
A/J	MGP_AJ_G0002593	pseudogenic gene segment	Chr14:46958078-46958696 (+)
AKR/J	MGP_AKRJ_G0002578	pseudogenic gene segment	Chr14:48657172-48657790 (+)
BALB/cJ	MGP_BALBcJ_G0002581	pseudogenic gene segment	Chr14:46926363-46926981 (+)
C3H/HeJ	MGP_C3HHeJ_G0002544	pseudogenic gene segment	Chr14:48335489-48336107 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002724	pseudogenic gene segment	Chr14:50293349-50293966 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002275	pseudogenic gene segment	Chr14:45385933-45386539 (+)
CAST/EiJ	MGP_CASTEiJ_G0002520	pseudogenic gene segment	Chr14:44579342-44579960 (+)
CBA/J	MGP_CBAJ_G0002540	pseudogenic gene segment	Chr14:51793637-51794255 (+)
DBA/2J	MGP_DBA2J_G0002543	pseudogenic gene segment	Chr14:46689101-46689719 (+)
FVB/NJ	MGP_FVBNJ_G0002571	pseudogenic gene segment	Chr14:46163551-46164169 (+)
LP/J	MGP_LPJ_G0002623	pseudogenic gene segment	Chr14:48880823-48881441 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002553	pseudogenic gene segment	Chr14:51257103-51257721 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002734	pseudogenic gene segment	Chr14:47842526-47843144 (+)
PWK/PhJ	MGP_PWKPhJ_G0002477	pseudogenic gene segment	Chr14:43230014-43230632 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002427	pseudogenic gene segment	Chr14:43819386-43820006 (+)
WSB/EiJ	MGP_WSBEiJ_G0002548	pseudogenic gene segment	Chr14:48138893-48139511 (+)

Homology

• Gene Tree
  Trav22
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav22
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104650 (Evidence)
• NCBI Gene
  100101941

Representative Sequences			Length	Strain/Species
genomic	100101941	NCBI Gene Model | MGI Sequence Detail	618	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;