Trav22 Pseudogene Detail

Summary

• Symbol
  Trav22
• Name
  T cell receptor alpha variable 22

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009957
  NCBI Gene: 100101941
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54164435-54165052 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009957	pseudogenic gene segment	Chr14:54164435-54165052 (+)
129S1/SvImJ	ENSMUSG00200044748	pseudogenic gene segment	Chr14:42761592-42762210 (+)
A/J	ENSMUSG00195034211	pseudogenic gene segment	Chr14:42985413-42986031 (+)
AKR/J	ENSMUSG00220037670	pseudogenic gene segment	Chr14:42315479-42316097 (+)
BALB/cJ	ENSMUSG00180052673	pseudogenic gene segment	Chr14:42609186-42609804 (+)
C3H/HeJ	ENSMUSG00175050694	pseudogenic gene segment	Chr14:44291641-44292259 (+)
C57BL/6NJ	ENSMUSG00215050476	pseudogenic gene segment	Chr14:42487235-42487852 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002275	pseudogenic gene segment	Chr14:45385933-45386539 (+)
CAST/EiJ	ENSTCUG00005050022	pseudogenic gene segment	Chr14:44306401-44307019 (+)
CBA/J	ENSMUSG00210049489	pseudogenic gene segment	Chr14:42972213-42972831 (+)
DBA/2J	ENSMUSG00185055447	pseudogenic gene segment	Chr14:48013393-48014011 (+)
FVB/NJ	ENSMUSG00205042082	pseudogenic gene segment	Chr14:42374904-42375522 (+)
JF1/MsJ	ENSUMUG00000054468	pseudogenic gene segment	Chr14:59279249-59279866 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190049349	pseudogenic gene segment	Chr14:42716361-42716979 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010051991	pseudogenic gene segment	Chr14:42195692-42196310 (+)
SPRET/EiJ	ENSMSPG00010048189	pseudogenic gene segment	Chr14:45590959-45591579 (+)
WSB/EiJ	ENSIUOG00005047936	pseudogenic gene segment	Chr14:42193927-42194545 (+)

Homology

• Gene Tree
  Trav22
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav22
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000104650 (Evidence)
• NCBI Gene
  100101941

Representative Sequences			Length	Strain/Species
genomic	100101941	NCBI Gene Model | MGI Sequence Detail	618	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;