Trav15d-3 Pseudogene Detail

Summary

• Symbol
  Trav15d-3
• Name
  T cell receptor alpha variable 15D-3

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009955
  NCBI Gene: 100101934
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53319811-53319977 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009955	pseudogenic gene segment	Chr14:53319520-53319979 (+)
129S1/SvImJ	ENSMUSG00200042131	pseudogenic gene segment	Chr14:42560618-42560784 (+)
A/J	ENSMUSG00195036260	pseudogenic gene segment	Chr14:42784428-42784594 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180053692	pseudogenic gene segment	Chr14:42408208-42408374 (+)
C3H/HeJ	ENSMUSG00175052685	pseudogenic gene segment	Chr14:44090656-44090822 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0002271	pseudogenic gene segment	Chr14:45214727-45214893 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000054839	pseudogenic gene segment	Chr14:59106747-59106913 (+)
LP/J	ENSMUSG00230053500	pseudogenic gene segment	Chr14:59926662-59926828 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225052368	pseudogenic gene segment	Chr14:50224719-50224885 (+)
PWK/PhJ	ENSLUMG00010052062	pseudogenic gene segment	Chr14:41994737-41994903 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Trav15d-3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav15d-3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000106481 (Evidence)
• NCBI Gene
  100101934

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106481	Ensembl Gene Model | MGI Sequence Detail	167	C57BL/6J
transcript	ENSMUST00000198604	Ensembl | MGI Sequence Detail	167	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;