Gm17782 Pseudogene Detail

Summary

• Symbol
  Gm17782
• Name
  predicted gene, 17782

• Feature Type
  pseudogene
• IDs
  MGI:5009946
  NCBI Gene: 100047646
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:36467423-36472971 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  280 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009946	pseudogene	Chr17:36467423-36472971 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195049146	pseudogene	Chr17:33066262-33068992 (-)
AKR/J	ENSMUSG00220052299	pseudogene	Chr17:31942648-31948196 (-)
BALB/cJ	ENSMUSG00180043200	pseudogene	Chr17:32571026-32576568 (-)
C3H/HeJ	ENSMUSG00175043860	pseudogene	Chr17:31828460-31834008 (-)
C57BL/6NJ	ENSMUSG00215053747	pseudogene	Chr17:31897325-31902873 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037200	pseudogene	Chr17:32943306-32946615 (-)
CAST/EiJ	ENSTCUG00005052470	pseudogene	Chr17:32986047-32988633 (-)
CBA/J	ENSMUSG00210052378	pseudogene	Chr17:31650462-31656008 (-)
DBA/2J	ENSMUSG00185054980	pseudogene	Chr17:34590157-34595699 (-)
FVB/NJ	ENSMUSG00205053482	pseudogene	Chr17:32122454-32125184 (-)
JF1/MsJ	ENSUMUG00000057990	pseudogene	Chr17:33430399-33464096 (-)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225054978	pseudogene	Chr17:37654493-37660035 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051773	pseudogene	Chr17:32572408-32584291 (-)

Homology

• Gene Tree
  Gm17782
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  6
• Targeted
  1
• Genomic Mutations
  1 involving Gm17782
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000092366 (Evidence)
• NCBI Gene
  100047646

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092366	Ensembl Gene Model | MGI Sequence Detail	5549	C57BL/6J
transcript	ENSMUST00000174345	Ensembl | MGI Sequence Detail	880	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
• Latest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53