Gm17779 Pseudogene Detail

Summary

• Symbol
  Gm17779
• Name
  predicted gene, 17779

• Feature Type
  pseudogene
• IDs
  MGI:5009943
  NCBI Gene: 100046961
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:38804285-38804678 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 20.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009943	pseudogene	Chr10:38803885-38804725 (+)
129S1/SvImJ	ENSMUSG00200009303	pseudogene	Chr10:35650487-35650880 (+)
A/J	ENSMUSG00195018590	pseudogene	Chr10:35964355-35964748 (+)
AKR/J	ENSMUSG00220028574	pseudogene	Chr10:35638702-35639095 (+)
BALB/cJ	ENSMUSG00180016623	pseudogene	Chr10:36047350-36047743 (+)
C3H/HeJ	ENSMUSG00175012267	pseudogene	Chr10:35841389-35841782 (+)
C57BL/6NJ	ENSMUSG00215009833	pseudogene	Chr10:35592545-35592938 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029702	pseudogene	Chr10:36043727-36044133 (+)
CBA/J	ENSMUSG00210026282	pseudogene	Chr10:35735230-35735623 (+)
DBA/2J	ENSMUSG00185008657	pseudogene	Chr10:35887753-35888146 (+)
FVB/NJ	ENSMUSG00205015323	pseudogene	Chr10:35803405-35803798 (+)
JF1/MsJ	ENSUMUG00000033756	pseudogene	Chr10:35649357-35649763 (+)
LP/J	ENSMUSG00230016092	pseudogene	Chr10:37648415-37648808 (+)
NOD/ShiLtJ	ENSMUSG00190031841	pseudogene	Chr10:36016178-36016571 (+)
NZO/HlLtJ	ENSMUSG00225017803	pseudogene	Chr10:41973938-41974331 (+)
PWK/PhJ	ENSLUMG00010008013	pseudogene	Chr10:35776353-35776759 (+)
SPRET/EiJ	ENSMSPG00010021767	pseudogene	Chr10:36811117-36811522 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17779
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17779
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111431 (Evidence)
• NCBI Gene
  100046961

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111431	Ensembl Gene Model | MGI Sequence Detail	394	C57BL/6J
transcript	ENSMUST00000213395	Ensembl | MGI Sequence Detail	394	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87