Ighv1-40 Pseudogene Detail

Summary

• Symbol
  Ighv1-40
• Name
  immunoglobulin heavy variable 1-40

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009912
  NCBI Gene: 780892
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:114888561-114888853 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009912	pseudogenic gene segment	Chr12:114888561-114888988 (-)
129S1/SvImJ	ENSMUSG00200031227	pseudogenic gene segment	Chr12:107098508-107098935 (-)
A/J	ENSMUSG00195050126	pseudogenic gene segment	Chr12:109508420-109508847 (-)
AKR/J	ENSMUSG00220040942	pseudogenic gene segment	Chr12:107084119-107084546 (-)
BALB/cJ	ENSMUSG00180050719	pseudogenic gene segment	Chr12:109202439-109202866 (-)
C3H/HeJ	ENSMUSG00175047693	pseudogenic gene segment	Chr12:110875137-110875564 (-)
C57BL/6NJ	ENSMUSG00215049333	pseudogenic gene segment	Chr12:107755883-107756310 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040992	pseudogenic gene segment	Chr12:108244403-108244830 (-)
CBA/J	ENSMUSG00210035227	pseudogenic gene segment	Chr12:108151273-108151700 (-)
DBA/2J	ENSMUSG00185035824	pseudogenic gene segment	Chr12:110407195-110407622 (-)
DBA/2J	ENSMUSG00185036116	pseudogenic gene segment	Chr12:110526062-110526489 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000023321	pseudogenic gene segment	Chr12:114627008-114627435 (-)
LP/J	ENSMUSG00230049361	pseudogenic gene segment	Chr12:116979857-116980284 (-)
NOD/ShiLtJ	ENSMUSG00190040823	pseudogenic gene segment	Chr12:106594242-106594669 (-)
NZO/HlLtJ	ENSMUSG00225044343	pseudogenic gene segment	Chr12:118886672-118887099 (-)
PWK/PhJ	ENSLUMG00010051130	pseudogenic gene segment	Chr12:108271367-108271795 (-)
SPRET/EiJ	ENSMSPG00010023879	pseudogenic gene segment	Chr12:111038278-111038705 (-)
WSB/EiJ	ENSIUOG00005039348	pseudogenic gene segment	Chr12:107551657-107552084 (-)

Homology

• Gene Tree
  Ighv1-40
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000102991 (Evidence)
• NCBI Gene
  780892

Representative Sequences			Length	Strain/Species
genomic	780892	NCBI Gene Model | MGI Sequence Detail	293	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;