Ighv5-3 Pseudogene Detail

Summary

• Symbol
  Ighv5-3
• Name
  immunoglobulin heavy variable 5-3

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009887
  NCBI Gene: 777687
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:113553587-113553863 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009887	pseudogenic gene segment	Chr12:113553587-113554033 (-)
129S1/SvImJ	ENSMUSG00200029912	pseudogenic gene segment	Chr12:105356899-105357345 (-)
A/J	ENSMUSG00195048742	pseudogenic gene segment	Chr12:107862040-107862486 (-)
AKR/J	ENSMUSG00220039714	pseudogenic gene segment	Chr12:105817845-105818300 (-)
BALB/cJ	ENSMUSG00180051131	pseudogenic gene segment	Chr12:107125512-107125958 (-)
C3H/HeJ	ENSMUSG00175050176	pseudogenic gene segment	Chr12:109744347-109744802 (-)
C57BL/6NJ	ENSMUSG00215050171	pseudogenic gene segment	Chr12:106377730-106378176 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043709	pseudogenic gene segment	Chr12:106035159-106035605 (-)
CBA/J	ENSMUSG00210040635	pseudogenic gene segment	Chr12:106771753-106772200 (-)
DBA/2J	ENSMUSG00185030811	pseudogenic gene segment	Chr12:108587630-108588076 (-)
FVB/NJ	ENSMUSG00205047257	pseudogenic gene segment	Chr12:105801273-105801719 (-)
JF1/MsJ	ENSUMUG00000034190	pseudogenic gene segment	Chr12:113348625-113349071 (-)
LP/J	ENSMUSG00230046851	pseudogenic gene segment	Chr12:115605712-115606158 (-)
NOD/ShiLtJ	ENSMUSG00190027781	pseudogenic gene segment	Chr12:105188805-105189251 (-)
NZO/HlLtJ	ENSMUSG00225044596	pseudogenic gene segment	Chr12:117367341-117367787 (-)
PWK/PhJ	ENSLUMG00010051564	pseudogenic gene segment	Chr12:106844171-106844617 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005041604	pseudogenic gene segment	Chr12:106069567-106070013 (-)

Homology

• Gene Tree
  Ighv5-3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000103934 (Evidence)
• NCBI Gene
  777687

Representative Sequences			Length	Strain/Species
genomic	777687	NCBI Gene Model | MGI Sequence Detail	277	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;