Ighv5-1 Pseudogene Detail

Summary

• Symbol
  Ighv5-1
• Name
  immunoglobulin heavy variable 5-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009886
  NCBI Gene: 777683
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:113536549-113536842 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009886	pseudogenic gene segment	Chr12:113536547-113537022 (-)
129S1/SvImJ	ENSMUSG00200029886	pseudogenic gene segment	Chr12:105339865-105340333 (-)
A/J	ENSMUSG00195048807	pseudogenic gene segment	Chr12:107829806-107830274 (-)
AKR/J	ENSMUSG00220039590	pseudogenic gene segment	Chr12:105755572-105756040 (-)
BALB/cJ	ENSMUSG00180051122	pseudogenic gene segment	Chr12:107108480-107108948 (-)
C3H/HeJ	ENSMUSG00175050098	pseudogenic gene segment	Chr12:109682057-109682525 (-)
C57BL/6NJ	ENSMUSG00215050157	pseudogenic gene segment	Chr12:106360688-106361163 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043636	pseudogenic gene segment	Chr12:106002891-106003365 (-)
CBA/J	ENSMUSG00210040606	pseudogenic gene segment	Chr12:106738485-106738953 (-)
DBA/2J	ENSMUSG00185030771	pseudogenic gene segment	Chr12:108555394-108555862 (-)
FVB/NJ	ENSMUSG00205047242	pseudogenic gene segment	Chr12:105784729-105785197 (-)
JF1/MsJ	ENSUMUG00000034171	pseudogenic gene segment	Chr12:113331541-113332016 (-)
LP/J	ENSMUSG00230048096	pseudogenic gene segment	Chr12:115588672-115589147 (-)
NOD/ShiLtJ	ENSMUSG00190027728	pseudogenic gene segment	Chr12:105171767-105172242 (-)
NZO/HlLtJ	ENSMUSG00225043262	pseudogenic gene segment	Chr12:117334076-117334544 (-)
PWK/PhJ	ENSLUMG00010051530	pseudogenic gene segment	Chr12:106813299-106813767 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005041583	pseudogenic gene segment	Chr12:106053010-106053478 (-)

Homology

• Gene Tree
  Ighv5-1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000102901 (Evidence)
• NCBI Gene
  777683

Representative Sequences			Length	Strain/Species
genomic	777683	NCBI Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	PX769856	GenBank | ENA | DDBJ | MGI Sequence Detail	521	B6; 129S4-Ighmtm1Che/J*

References

• Summaries
  All 6
• Earliest
  J:70059 Williams GS, et al., Unequal v(h) gene rearrangement frequency within the large v(h)7183 gene family is not due to recombination signal sequence variation, and mapping of the genes shows a bias of rearrangement based on chromosomal location. J Immunol. 2001 Jul 1;167(1):257-63
• Latest
  J:171360 Kalinina O, et al., Alternative mechanisms of receptor editing in autoreactive B cells. Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7125-30