Igkv13-80-1 Pseudogene Detail

Summary

• Symbol
  Igkv13-80-1
• Name
  immunoglobulin kappa chain variable 13-80-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009865
  NCBI Gene: 692143
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:68986127-68986497 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009865	pseudogenic gene segment	Chr6:68986127-68986497 (+)
129S1/SvImJ	ENSMUSG00200014028	pseudogenic gene segment	Chr6:65892591-65892961 (+)
A/J	ENSMUSG00195042890	pseudogenic gene segment	Chr6:65645507-65645877 (+)
AKR/J	ENSMUSG00220045893	pseudogenic gene segment	Chr6:65054013-65054383 (+)
BALB/cJ	ENSMUSG00180042365	pseudogenic gene segment	Chr6:66001389-66001759 (+)
C3H/HeJ	ENSMUSG00175012558	pseudogenic gene segment	Chr6:111448564-111448934 (-)
C57BL/6NJ	ENSMUSG00215043351	pseudogenic gene segment	Chr6:65975930-65976300 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039073	pseudogenic gene segment	Chr6:66440619-66440989 (+)
CBA/J	ENSMUSG00210042640	pseudogenic gene segment	Chr6:65798769-65799139 (+)
DBA/2J	ENSMUSG00185046065	pseudogenic gene segment	Chr6:66362009-66362379 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000043946	pseudogenic gene segment	Chr6:65608515-65608885 (+)
LP/J	ENSMUSG00230028799	pseudogenic gene segment	Chr6:67484327-67484697 (+)
NOD/ShiLtJ	ENSMUSG00190041373	pseudogenic gene segment	Chr6:65549397-65549767 (+)
NZO/HlLtJ	ENSMUSG00225020466	pseudogenic gene segment	Chr6:69452632-69453002 (+)
PWK/PhJ	ENSLUMG00010020575	pseudogenic gene segment	Chr6:64995551-64995921 (+)
PWK/PhJ	ENSLUMG00010020582	pseudogenic gene segment	Chr6:65380733-65381102 (+)
SPRET/EiJ	ENSMSPG00010025566	pseudogenic gene segment	Chr6:67106289-67106659 (+)
WSB/EiJ	ENSIUOG00005025227	pseudogenic gene segment	Chr6:66711043-66711413 (+)

Homology

• Gene Tree
  Igkv13-80-1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105539 (Evidence)
• NCBI Gene
  692143

Representative Sequences			Length	Strain/Species
genomic	692143	NCBI Gene Model | MGI Sequence Detail	371	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;