Igkv13-56-1 Pseudogene Detail

Summary

• Symbol
  Igkv13-56-1
• Name
  immunoglobulin kappa chain variable 13-56-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009855
  NCBI Gene: 692113
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:69558228-69558436 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009855	pseudogenic gene segment	Chr6:69558228-69558436 (+)
129S1/SvImJ	ENSMUSG00200014151	pseudogenic gene segment	Chr6:66464720-66464928 (+)
A/J	ENSMUSG00195044530	pseudogenic gene segment	Chr6:66217646-66217854 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180039132	pseudogenic gene segment	Chr6:66573510-66573718 (+)
C3H/HeJ	ENSMUSG00175013697	pseudogenic gene segment	Chr6:110876583-110876791 (-)
C57BL/6NJ	ENSMUSG00215043814	pseudogenic gene segment	Chr6:66548063-66548271 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047295	pseudogenic gene segment	Chr6:66370881-66371089 (+)
DBA/2J	ENSMUSG00185044996	pseudogenic gene segment	Chr6:66936096-66936304 (+)
FVB/NJ	ENSMUSG00205042694	pseudogenic gene segment	Chr6:65914544-65914752 (+)
JF1/MsJ	ENSUMUG00000043761	pseudogenic gene segment	Chr6:66035053-66035067 (+)
LP/J	ENSMUSG00230030887	pseudogenic gene segment	Chr6:68056406-68056614 (+)
NOD/ShiLtJ	ENSMUSG00190046775	pseudogenic gene segment	Chr6:65975825-65975839 (+)
NZO/HlLtJ	ENSMUSG00225021513	pseudogenic gene segment	Chr6:70030281-70030489 (+)
PWK/PhJ	ENSLUMG00010022308	pseudogenic gene segment	Chr6:65393935-65394143 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Igkv13-56-1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000106546 (Evidence)
• NCBI Gene
  692113

Representative Sequences			Length	Strain/Species
genomic	692113	NCBI Gene Model | MGI Sequence Detail	209	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;