Igkv12-42 Pseudogene Detail

Summary

• Symbol
  Igkv12-42
• Name
  immunoglobulin kappa chain variable 12-42

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009852
  NCBI Gene: 677861
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:69811776-69812225 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  170 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009852	pseudogenic gene segment	Chr6:69811776-69812229 (-)
129S1/SvImJ	ENSMUSG00200013938	pseudogenic gene segment	Chr6:66718271-66718720 (-)
A/J	ENSMUSG00195047315	pseudogenic gene segment	Chr6:66471199-66471648 (-)
AKR/J	ENSMUSG00220046626	pseudogenic gene segment	Chr6:65547176-65547625 (-)
BALB/cJ	ENSMUSG00180037249	pseudogenic gene segment	Chr6:66827069-66827518 (-)
C3H/HeJ	ENSMUSG00175012768	pseudogenic gene segment	Chr6:110622801-110623250 (+)
C57BL/6NJ	ENSMUSG00215042568	pseudogenic gene segment	Chr6:66801624-66802073 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037592	pseudogenic gene segment	Chr6:66947865-66948315 (-)
CBA/J	ENSMUSG00210042242	pseudogenic gene segment	Chr6:66624433-66624882 (-)
DBA/2J	ENSMUSG00185043177	pseudogenic gene segment	Chr6:67189651-67190100 (-)
FVB/NJ	ENSMUSG00205033314	pseudogenic gene segment	Chr6:66168119-66168568 (-)
JF1/MsJ	ENSUMUG00000041016	pseudogenic gene segment	Chr6:66216657-66217106 (-)
LP/J	ENSMUSG00230028670	pseudogenic gene segment	Chr6:68309951-68310400 (-)
NOD/ShiLtJ	ENSMUSG00190046644	pseudogenic gene segment	Chr6:66157415-66157864 (-)
NZO/HlLtJ	ENSMUSG00225020381	pseudogenic gene segment	Chr6:70283833-70284282 (-)
PWK/PhJ	ENSLUMG00010022729	pseudogenic gene segment	Chr6:65555712-65556177 (-)
SPRET/EiJ	ENSMSPG00010030843	pseudogenic gene segment	Chr6:67584145-67584594 (-)
WSB/EiJ	ENSIUOG00005026108	pseudogenic gene segment	Chr6:67446508-67446987 (-)

Homology

• Gene Tree
  Igkv12-42
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105915 (Evidence)
• NCBI Gene
  677861

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105915	Ensembl Gene Model | MGI Sequence Detail	450	C57BL/6J
transcript	ENSMUST00000198769	Ensembl | MGI Sequence Detail	327	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Igkv12-42:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61299	Chr6:69812253-69812258 (-)	-31 bp