Igkv5-40-1 Pseudogene Detail

Summary

• Symbol
  Igkv5-40-1
• Name
  immunoglobulin kappa chain variable 5-40-1

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009831
  NCBI Gene: 619974
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:69845611-69846177 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009831	pseudogenic gene segment	Chr6:69845579-69846177 (-)
129S1/SvImJ	ENSMUSG00200013933	pseudogenic gene segment	Chr6:66752103-66752669 (-)
A/J	ENSMUSG00195047307	pseudogenic gene segment	Chr6:66505038-66505604 (-)
AKR/J	ENSMUSG00220046616	pseudogenic gene segment	Chr6:65552122-65552684 (-)
BALB/cJ	ENSMUSG00180037232	pseudogenic gene segment	Chr6:66860917-66861483 (-)
C3H/HeJ	ENSMUSG00175012751	pseudogenic gene segment	Chr6:110588847-110589413 (+)
C57BL/6NJ	ENSMUSG00215042561	pseudogenic gene segment	Chr6:66835464-66836030 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037568	pseudogenic gene segment	Chr6:66981671-66982235 (-)
CBA/J	ENSMUSG00210042216	pseudogenic gene segment	Chr6:66658269-66658835 (-)
DBA/2J	ENSMUSG00185043162	pseudogenic gene segment	Chr6:67223486-67224052 (-)
FVB/NJ	ENSMUSG00205033256	pseudogenic gene segment	Chr6:66201965-66202531 (-)
JF1/MsJ	ENSUMUG00000040979	pseudogenic gene segment	Chr6:66295817-66296379 (-)
LP/J	ENSMUSG00230029602	pseudogenic gene segment	Chr6:68343781-68344347 (-)
NOD/ShiLtJ	ENSMUSG00190046630	pseudogenic gene segment	Chr6:66236566-66237128 (-)
NZO/HlLtJ	ENSMUSG00225020894	pseudogenic gene segment	Chr6:70317669-70318235 (-)
PWK/PhJ	ENSLUMG00010022599	pseudogenic gene segment	Chr6:65630304-65630870 (-)
SPRET/EiJ	ENSMSPG00010030810	pseudogenic gene segment	Chr6:67643604-67643841 (-)
WSB/EiJ	ENSIUOG00005026095	pseudogenic gene segment	Chr6:67482069-67482629 (-)

Homology

• Gene Tree
  Igkv5-40-1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104533 (Evidence)
• NCBI Gene
  619974

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104533	Ensembl Gene Model | MGI Sequence Detail	567	C57BL/6J
transcript	ENSMUST00000196457	Ensembl | MGI Sequence Detail	359	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Igkv5-40-1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1878	Chr6:69846205-69846209 (-)	-30 bp