Igkv12-49 Pseudogene Detail

Summary

• Symbol
  Igkv12-49
• Name
  immunoglobulin kappa chain variable 12-49

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5009830
  NCBI Gene: 619824
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:69693546-69693940 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5009830	pseudogenic gene segment	Chr6:69693482-69693940 (-)
129S1/SvImJ	ENSMUSG00200012030	pseudogenic gene segment	Chr6:66600040-66600434 (-)
A/J	ENSMUSG00195044575	pseudogenic gene segment	Chr6:66352971-66353365 (-)
AKR/J	ENSMUSG00220046969	pseudogenic gene segment	Chr6:65398425-65398804 (-)
BALB/cJ	ENSMUSG00180038551	pseudogenic gene segment	Chr6:66708831-66709225 (-)
C3H/HeJ	ENSMUSG00175013521	pseudogenic gene segment	Chr6:110741082-110741476 (+)
C57BL/6NJ	ENSMUSG00215043637	pseudogenic gene segment	Chr6:66683389-66683783 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036375	pseudogenic gene segment	Chr6:66874819-66875213 (-)
CBA/J	ENSMUSG00210040462	pseudogenic gene segment	Chr6:66506194-66506588 (-)
DBA/2J	ENSMUSG00185043251	pseudogenic gene segment	Chr6:67071414-67071808 (-)
FVB/NJ	ENSMUSG00205033970	pseudogenic gene segment	Chr6:66049879-66050273 (-)
JF1/MsJ	ENSUMUG00000045715	pseudogenic gene segment	Chr6:66067904-66068283 (-)
LP/J	ENSMUSG00230029959	pseudogenic gene segment	Chr6:68191722-68192116 (-)
NOD/ShiLtJ	ENSMUSG00190044050	pseudogenic gene segment	Chr6:66008682-66009061 (-)
NZO/HlLtJ	ENSMUSG00225021064	pseudogenic gene segment	Chr6:70165602-70165996 (-)
PWK/PhJ	ENSLUMG00010021161	pseudogenic gene segment	Chr6:65492835-65493214 (-)
SPRET/EiJ	ENSMSPG00010026703	pseudogenic gene segment	Chr6:67539729-67540123 (-)
WSB/EiJ	ENSIUOG00005025360	pseudogenic gene segment	Chr6:67382740-67383119 (-)

Homology

• Gene Tree
  Igkv12-49
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105725 (Evidence)
• NCBI Gene
  619824

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105725	Ensembl Gene Model | MGI Sequence Detail	395	C57BL/6J
transcript	ENSMUST00000197714	Ensembl | MGI Sequence Detail	278	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;