Gm17231 Gene Detail

Summary

• Symbol
  Gm17231
• Name
  predicted gene 17231

• Feature Type
  lncRNA gene
• IDs
  MGI:4938058
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:57685148-57741578 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 31.53 cM

Strain
Comparison

• SNPs within 2kb
  1174 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938058	lncRNA gene	Chr9:57685148-57741578 (+)
129S1/SvImJ	ENSMUSG00200036247	lncRNA gene	Chr9:54811801-54868354 (+)
A/J	ENSMUSG00195041609	lncRNA gene	Chr9:54512046-54568450 (+)
AKR/J	ENSMUSG00220031319	lncRNA gene	Chr9:54652882-54709288 (+)
BALB/cJ	ENSMUSG00180019354	lncRNA gene	Chr9:54625563-54682007 (+)
C3H/HeJ	ENSMUSG00175022199	lncRNA gene	Chr9:54638846-54695247 (+)
C57BL/6NJ	ENSMUSG00215034642	lncRNA gene	Chr9:54618923-54675360 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004199	antisense lncRNA gene	Chr9:54474078-54529607 (+)
CAST/EiJ	ENSTCUG00005021393	lncRNA gene	Chr9:54545073-54601532 (+)
CBA/J	ENSMUSG00210041381	lncRNA gene	Chr9:54747152-54803575 (+)
DBA/2J	ENSMUSG00185044374	lncRNA gene	Chr9:54769328-54825762 (+)
FVB/NJ	ENSMUSG00205045184	lncRNA gene	Chr9:55076114-55132535 (+)
JF1/MsJ	ENSUMUG00000049318	lncRNA gene	Chr9:54787503-54842168 (+)
LP/J	ENSMUSG00230039151	lncRNA gene	Chr9:55011571-55068123 (+)
NOD/ShiLtJ	ENSMUSG00190046275	lncRNA gene	Chr9:54837336-54893751 (+)
NZO/HlLtJ	ENSMUSG00225028610	lncRNA gene	Chr9:55050393-55106794 (+)
PWK/PhJ	ENSLUMG00010040440	lncRNA gene	Chr9:54745492-54800217 (+)
SPRET/EiJ	ENSMSPG00010028954	lncRNA gene	Chr9:55783230-55840731 (+)
WSB/EiJ	ENSIUOG00005042038	lncRNA gene	Chr9:54250458-54306859 (+)

Homology

• Gene Tree
  Gm17231
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  13
• Gene trapped
  13
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000091908 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091908	Ensembl Gene Model | MGI Sequence Detail	56431	C57BL/6J
transcript	ENSMUST00000165858	Ensembl | MGI Sequence Detail	663	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17231:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85329	Chr9:57685112-57685150 (+)	-17 bp
Tssr85330	Chr9:57733201-57733228 (+)	48,067 bp
Tssr85331	Chr9:57734567-57734579 (+)	49,425 bp