Gm17227 Gene Detail

Summary

• Symbol
  Gm17227
• Name
  predicted gene 17227

• Feature Type
  lncRNA gene
• IDs
  MGI:4938054
  NCBI Gene: 102639888
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:7275050-7281728 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 5.32 cM

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4938054	lncRNA gene	Chr19:7274650-7281893 (+)
129S1/SvImJ	ENSMUSG00200052802	lncRNA gene	Chr19:4000567-4007438 (+)
A/J	ENSMUSG00195053231	lncRNA gene	Chr19:4402482-4409354 (+)
AKR/J	ENSMUSG00220050425	lncRNA gene	Chr19:4171866-4178736 (+)
BALB/cJ	ENSMUSG00180051743	lncRNA gene	Chr19:4766009-4772879 (+)
C3H/HeJ	ENSMUSG00175015583	lncRNA gene	Chr19:4022481-4029351 (+)
C57BL/6NJ	ENSMUSG00215047969	lncRNA gene	Chr19:4241001-4247870 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003088	antisense lncRNA gene	Chr19:3976890-3983697 (+)
CAST/EiJ	ENSTCUG00005043613	lncRNA gene	Chr19:4142508-4149450 (+)
CBA/J	ENSMUSG00210050655	lncRNA gene	Chr19:4025423-4032288 (+)
DBA/2J	ENSMUSG00185052374	lncRNA gene	Chr19:4401899-4408765 (+)
FVB/NJ	ENSMUSG00205053423	lncRNA gene	Chr19:4399990-4406915 (+)
JF1/MsJ	ENSUMUG00000056676	lncRNA gene	Chr19:4362335-4369298 (+)
LP/J	ENSMUSG00230054199	lncRNA gene	Chr19:5327283-5334153 (+)
NOD/ShiLtJ	ENSMUSG00190053422	lncRNA gene	Chr19:3933744-3940614 (+)
NZO/HlLtJ	ENSMUSG00225027103	lncRNA gene	Chr19:9036106-9042976 (+)
PWK/PhJ	ENSLUMG00010008471	lncRNA gene	Chr19:4126049-4132980 (+)
SPRET/EiJ	ENSMSPG00010050612	lncRNA gene	Chr19:4123476-4130417 (+)
WSB/EiJ	ENSIUOG00005051788	lncRNA gene	Chr19:4039660-4046533 (+)

Homology

• Gene Tree
  Gm17227
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000091558 (Evidence)
• NCBI Gene
  102639888

Representative Sequences			Length	Strain/Species
genomic	102639888	NCBI Gene Model | MGI Sequence Detail	6679	C57BL/6J
transcript	NR_167747	RefSeq | MGI Sequence Detail	824	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm17227:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154747	Chr19:7275039-7275058 (+)	-1 bp
Tssr154748	Chr19:7275075-7275087 (+)	31 bp
Tssr154749	Chr19:7275089-7275098 (+)	44 bp