Gm17112 Gene Detail

Summary

• Symbol
  Gm17112
• Name
  predicted gene 17112

• Feature Type
  lncRNA gene
• IDs
  MGI:4937939
  NCBI Gene: 118568758
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:137530685-137538980 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.54 cM

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937939	lncRNA gene	Chr5:137530685-137541893 (+)
129S1/SvImJ	ENSMUSG00200048767	lncRNA gene	Chr5:131325705-131333998 (+)
A/J	ENSMUSG00195051691	lncRNA gene	Chr5:130828483-130836780 (+)
AKR/J	ENSMUSG00220051127	lncRNA gene	Chr5:130303556-130311851 (+)
BALB/cJ	ENSMUSG00180046056	lncRNA gene	Chr5:130925032-130933326 (+)
C3H/HeJ	ENSMUSG00175049557	lncRNA gene	Chr5:132852556-132860856 (+)
C57BL/6NJ	ENSMUSG00215049069	lncRNA gene	Chr5:130973896-130982192 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003793	antisense lncRNA gene	Chr5:130335814-130344305 (+)
CAST/EiJ	ENSTCUG00005011071	lncRNA gene	Chr5:130195973-130204614 (+)
CBA/J	ENSMUSG00210008167	lncRNA gene	Chr5:131670141-131678436 (+)
DBA/2J	ENSMUSG00185054712	lncRNA gene	Chr5:134685512-134693807 (+)
FVB/NJ	ENSMUSG00205048789	lncRNA gene	Chr5:130569571-130577863 (+)
JF1/MsJ	ENSUMUG00000053820	lncRNA gene	Chr5:137579653-137588148 (+)
LP/J	ENSMUSG00230049801	lncRNA gene	Chr5:138798981-138807275 (+)
NOD/ShiLtJ	ENSMUSG00190048505	lncRNA gene	Chr5:130624797-130633093 (+)
NZO/HlLtJ	ENSMUSG00225024118	lncRNA gene	Chr5:146473696-146481981 (+)
PWK/PhJ	ENSLUMG00010018846	lncRNA gene	Chr5:129433634-129442032 (+)
SPRET/EiJ	ENSMSPG00010040631	lncRNA gene	Chr5:132831220-132839490 (+)
WSB/EiJ	ENSIUOG00005039138	lncRNA gene	Chr5:133275407-133283704 (+)

Homology

• Gene Tree
  Gm17112
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000090873 (Evidence)
• NCBI Gene
  118568758

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090873	Ensembl Gene Model | MGI Sequence Detail	8296	C57BL/6J
transcript	ENSMUST00000163194	Ensembl | MGI Sequence Detail	432	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17112:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49337	Chr5:137529546-137529553 (+)	-1,135 bp