Gm17081 Pseudogene Detail

Summary

• Symbol
  Gm17081
• Name
  predicted gene 17081
• Synonyms
  Gm17818

• Feature Type
  pseudogene
• IDs
  MGI:4937908
  NCBI Gene: 100310789
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:42239854-42240519 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 22.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937908	pseudogene	Chr4:42239725-42242073 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220038723	pseudogene	Chr4:38856799-38859118 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215034497	pseudogene	Chr4:38706899-38709247 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004947	pseudogene	Chr4:38567035-38569382 (+)
CAST/EiJ	ENSTCUG00005004950	pseudogene	Chr4:38572777-38577997 (+)
CAST/EiJ	ENSTCUG00005004954	pseudogene	Chr4:38578522-38580870 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185006826	pseudogene	Chr4:38849713-38852060 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000032668	pseudogene	Chr4:38717794-38790100 (+)
JF1/MsJ	ENSUMUG00000032107	pseudogene	Chr4:39002467-39004863 (+)
JF1/MsJ	ENSUMUG00000032086	pseudogene	Chr4:38996816-38999212 (+)
JF1/MsJ	ENSUMUG00000032762	pseudogene	Chr4:39030334-39032539 (+)
JF1/MsJ	ENSUMUG00000032747	pseudogene	Chr4:39027605-39029809 (+)
JF1/MsJ	ENSUMUG00000032131	pseudogene	Chr4:39013577-39015972 (+)
JF1/MsJ	ENSUMUG00000032687	pseudogene	Chr4:38793498-38795846 (+)
LP/J	ENSMUSG00230042703	pseudogene	Chr4:42232425-42234773 (+)
NOD/ShiLtJ	ENSMUSG00190006310	pseudogene	Chr4:38790125-38792796 (-)
NZO/HlLtJ	ENSMUSG00225007334	pseudogene	Chr4:46115768-46118116 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm17081
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm17081
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000090338 (Evidence)
• NCBI Gene
  100310789

Representative Sequences			Length	Strain/Species
genomic	100310789	NCBI Gene Model | MGI Sequence Detail	666	C57BL/6J

Other
Accession IDs

MGI:5010003

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:192799 Cattanach BM, et al., A further duplication involving chromosome 4, Dp(4)20H. Mouse Genome. 1996;94(3):680
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;