Gm17029 Gene Detail

Summary

• Symbol
  Gm17029
• Name
  predicted gene 17029

• Feature Type
  lncRNA gene
• IDs
  MGI:4937856
  NCBI Gene: 102635786
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:149044624-149058235 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.87 cM

Strain
Comparison

• SNPs within 2kb
  302 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937856	lncRNA gene	Chr4:149044624-149069128 (+)
129S1/SvImJ	ENSMUSG00200046890	lncRNA gene	Chr4:140084914-140109523 (+)
A/J	ENSMUSG00195037689	lncRNA gene	Chr4:141741695-141766285 (+)
AKR/J	ENSMUSG00220049184	lncRNA gene	Chr4:141328406-141352987 (+)
BALB/cJ	ENSMUSG00180048733	lncRNA gene	Chr4:139424302-139448887 (+)
C3H/HeJ	ENSMUSG00175020094	lncRNA gene	Chr4:142708846-142733460 (+)
C57BL/6NJ	ENSMUSG00215051378	lncRNA gene	Chr4:141547021-141571395 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003598	antisense lncRNA gene	Chr4:138823864-138848263 (+)
CAST/EiJ	ENSTCUG00005035835	lncRNA gene	Chr4:145380422-145404833 (+)
CBA/J	ENSMUSG00210030760	lncRNA gene	Chr4:141360503-141385127 (+)
DBA/2J	ENSMUSG00185016729	lncRNA gene	Chr4:144921985-144946601 (+)
FVB/NJ	ENSMUSG00205045364	lncRNA gene	Chr4:139816620-139840998 (+)
JF1/MsJ	ENSUMUG00000008713	lncRNA gene	Chr4:147938711-147963089 (+)
LP/J	ENSMUSG00230017356	lncRNA gene	Chr4:151656797-151681401 (+)
NOD/ShiLtJ	ENSMUSG00190035138	lncRNA gene	Chr4:141028575-141053184 (+)
NZO/HlLtJ	ENSMUSG00225024471	lncRNA gene	Chr4:155660782-155685314 (+)
PWK/PhJ	ENSLUMG00010047380	lncRNA gene	Chr4:140212762-140237374 (+)
SPRET/EiJ	ENSMSPG00010036254	lncRNA gene	Chr4:142140773-142165377 (+)
WSB/EiJ	ENSIUOG00005048567	lncRNA gene	Chr4:139198706-139223266 (+)

Homology

• Gene Tree
  Gm17029
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm17029
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000086740 (Evidence)
• NCBI Gene
  102635786

Representative Sequences			Length	Strain/Species
genomic	102635786	NCBI Gene Model | MGI Sequence Detail	13612	C57BL/6J
transcript	AK035651	GenBank | ENA | DDBJ | MGI Sequence Detail	2895	C57BL/6J

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Gm17029:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40315	Chr4:149044811-149044822 (+)	193 bp