Gm17020 Pseudogene Detail

Summary

• Symbol
  Gm17020
• Name
  predicted gene 17020

• Feature Type
  pseudogene
• IDs
  MGI:4937847
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:123591568-123591841 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 74.48 cM

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937847	pseudogene	Chr9:123591568-123591841 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014266	pseudogene	Chr9:126814100-126814374 (+)
A/J	MGP_AJ_G0014282	pseudogene	Chr9:121968367-121968640 (+)
AKR/J	MGP_AKRJ_G0014207	pseudogene	Chr9:125235173-125235446 (+)
BALB/cJ	MGP_BALBcJ_G0014232	pseudogene	Chr9:121896638-121896911 (+)
C3H/HeJ	MGP_C3HHeJ_G0014063	pseudogene	Chr9:125680059-125680332 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014686	pseudogene	Chr9:130318465-130318738 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012494	pseudogene	Chr9:119075523-119075796 (+)
CAST/EiJ	MGP_CASTEiJ_G0013714	pseudogene	Chr9:125731019-125731292 (+)
CBA/J	MGP_CBAJ_G0014046	pseudogene	Chr9:135083536-135083809 (+)
DBA/2J	MGP_DBA2J_G0014129	pseudogene	Chr9:121410534-121410807 (+)
FVB/NJ	MGP_FVBNJ_G0014127	pseudogene	Chr9:120316183-120316456 (+)
LP/J	MGP_LPJ_G0014220	pseudogene	Chr9:127216140-127216414 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014162	pseudogene	Chr9:135894170-135894443 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014655	pseudogene	Chr9:125699182-125699455 (+)
PWK/PhJ	MGP_PWKPhJ_G0013529	pseudogene	Chr9:121868466-121868740 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013321	pseudogene	Chr9:125804864-125805137 (+)
WSB/EiJ	MGP_WSBEiJ_G0013776	pseudogene	Chr9:125534739-125535012 (+)

Homology

• Gene Tree
  Gm17020
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000091149 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091149	Ensembl Gene Model | MGI Sequence Detail	274	C57BL/6J
transcript	ENSMUST00000172274	Ensembl | MGI Sequence Detail	274	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm17020:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87931	Chr9:123590504-123590512 (+)	-1,060 bp