Spata31h-ps1 Pseudogene Detail

Summary

• Symbol
  Spata31h-ps1
• Name
  SPATA31 subfamily H, pseudogene 1
• Synonyms
  Gm17695

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:4937329
  NCBI Gene: 102638085
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:28176315-28182048 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 13.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937329	pseudogene	Chr5:28157034-28182333 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  SPATA31H1, SPATA31 subfamily H member 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SPATA31H1, SPATA31 subfamily H member 1
  
• Synonyms
  C2orf16
• Links
  HGNC:25275

  NCBI Gene ID: 84226

  neXtProt AC: NX_Q68DN1

  UniProt: Q68DN1

  
  
• Chr Location
  2p23.3; chr2:27537386-27582722 (+)  GRCh38

---

• MGI Vertebrate Homology
  Spata31h-ps1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SPATA31H1
• Gene Tree
  Spata31h-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Radiation induced
  3
• Spontaneous
  1
• Genomic Mutations
  6 involving Spata31h-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2

• Ensembl
  ENSMUSG00000118586 (Evidence)
• NCBI Gene
  102638085

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118586	Ensembl Gene Model | MGI Sequence Detail	5734	C57BL/6J
transcript	ENSMUST00000239249	Ensembl | MGI Sequence Detail	5734	Not Applicable

References

• Summaries
  All 25

  Diseases 1

  Phenotypes 21
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707