Gm17690 Gene Detail

Summary

• Symbol
  Gm17690
• Name
  predicted gene, 17690

• Feature Type
  lncRNA gene
• IDs
  MGI:4937324
  NCBI Gene: 100504127
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:96067149-96079787 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  293 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937324	lncRNA gene	Chr3:96067149-96079787 (-)
129S1/SvImJ	ENSMUSG00200044671	lncRNA gene	Chr3:92749580-92754547 (-)
A/J	ENSMUSG00195050165	lncRNA gene	Chr3:93077896-93082864 (-)
AKR/J	ENSMUSG00220042945	lncRNA gene	Chr3:91454011-91458978 (-)
BALB/cJ	ENSMUSG00180043011	lncRNA gene	Chr3:93069235-93074204 (-)
C3H/HeJ	ENSMUSG00175030572	lncRNA gene	Chr3:92707519-92712486 (-)
C57BL/6NJ	ENSMUSG00215037151	lncRNA gene	Chr3:93429928-93434895 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003405	antisense lncRNA gene	Chr3:90257849-90263051 (-)
CAST/EiJ	ENSTCUG00005021820	lncRNA gene	Chr3:93264225-93269192 (-)
CBA/J	ENSMUSG00210051599	lncRNA gene	Chr3:93259243-93264210 (-)
DBA/2J	ENSMUSG00185047722	lncRNA gene	Chr3:93670970-93675937 (-)
FVB/NJ	ENSMUSG00205051605	lncRNA gene	Chr3:92360127-92365094 (-)
JF1/MsJ	ENSUMUG00000048508	lncRNA gene	Chr3:92548964-92553925 (-)
LP/J	ENSMUSG00230045806	lncRNA gene	Chr3:95612959-95617926 (-)
NOD/ShiLtJ	ENSMUSG00190048226	lncRNA gene	Chr3:93779612-93784581 (-)
NZO/HlLtJ	ENSMUSG00225012270	lncRNA gene	Chr3:98031387-98036355 (-)
PWK/PhJ	ENSLUMG00010031203	lncRNA gene	Chr3:92528636-92533597 (-)
SPRET/EiJ	ENSMSPG00010045528	lncRNA gene	Chr3:92838449-92843454 (-)
WSB/EiJ	ENSIUOG00005034575	lncRNA gene	Chr3:93179783-93184750 (-)

Homology

• Gene Tree
  Gm17690
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  17
• Chemically induced (other)
  1
• Gene trapped
  16
• Genomic Mutations
  1 involving Gm17690
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000097204 (Evidence)
• NCBI Gene
  100504127

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097204	Ensembl Gene Model | MGI Sequence Detail	12639	C57BL/6J
transcript	ENSMUST00000180958	Ensembl | MGI Sequence Detail	3467	Not Applicable

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17690:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34592	Chr3:96079700-96079778 (-)	48 bp