Gm17619 Gene Detail

Summary

• Symbol
  Gm17619
• Name
  predicted gene, 17619

• Feature Type
  lncRNA gene
• IDs
  MGI:4937253
  NCBI Gene: 100502923
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:170034368-170035973 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 90.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937253	lncRNA gene	Chr2:170018867-170036135 (-)
129S1/SvImJ	ENSMUSG00200041089	lncRNA gene	Chr2:166941700-166943339 (-)
A/J	ENSMUSG00195025985	lncRNA gene	Chr2:167284965-167286604 (-)
AKR/J	ENSMUSG00220038027	lncRNA gene	Chr2:166585836-166587475 (-)
BALB/cJ	ENSMUSG00180041067	lncRNA gene	Chr2:166733012-166734651 (-)
C3H/HeJ	ENSMUSG00175046028	lncRNA gene	Chr2:167505443-167507082 (-)
C57BL/6NJ	ENSMUSG00215033943	lncRNA gene	Chr2:166915271-166916910 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009448	lncRNA gene	Chr2:165824125-165825767 (-)
CBA/J	ENSMUSG00210045052	lncRNA gene	Chr2:167413082-167414721 (-)
DBA/2J	ENSMUSG00185027371	lncRNA gene	Chr2:167126995-167128634 (-)
FVB/NJ	ENSMUSG00205027335	lncRNA gene	Chr2:166160426-166162065 (-)
JF1/MsJ	ENSUMUG00000049769	lncRNA gene	Chr2:166804611-166806241 (-)
LP/J	ENSMUSG00230013002	lncRNA gene	Chr2:168702263-168703902 (-)
NOD/ShiLtJ	ENSMUSG00190046091	lncRNA gene	Chr2:166818703-166820342 (-)
NZO/HlLtJ	ENSMUSG00225003838	lncRNA gene	Chr2:176687086-176688725 (-)
PWK/PhJ	ENSLUMG00010038361	lncRNA gene	Chr2:166685390-166687021 (-)
SPRET/EiJ	ENSMSPG00010029751	lncRNA gene	Chr2:169431824-169433459 (-)
WSB/EiJ	ENSIUOG00005026967	lncRNA gene	Chr2:166526529-166528170 (-)

Homology

• Gene Tree
  Gm17619
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  72
• Gene trapped
  72
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000120007 (Evidence)
• NCBI Gene
  100502923

Representative Sequences			Length	Strain/Species
genomic	100502923	NCBI Gene Model | MGI Sequence Detail	1606	C57BL/6J
transcript	NR_157067	RefSeq | MGI Sequence Detail	1450	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Gm17619:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27917	Chr2:170037770-170037793 (-)	-1,809 bp
Tssr27916	Chr2:170035953-170035984 (-)	4 bp
Tssr27915	Chr2:170035373-170035384 (-)	594 bp