Traj36 Pseudogene Detail

Summary

• Symbol
  Traj36
• Name
  T cell receptor alpha joining 36
• Synonyms
  Gm17610

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4937244
  NCBI Gene: 100124353
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54419859-54419921 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937244	pseudogenic gene segment	Chr14:54419859-54419921 (+)
129S1/SvImJ	ENSMUSG00200045288	pseudogenic gene segment	Chr14:43012131-43012195 (+)
A/J	ENSMUSG00195037223	pseudogenic gene segment	Chr14:43236399-43236463 (+)
AKR/J	ENSMUSG00220035997	pseudogenic gene segment	Chr14:42564335-42564399 (+)
BALB/cJ	ENSMUSG00180053202	pseudogenic gene segment	Chr14:42860168-42860232 (+)
C3H/HeJ	ENSMUSG00175052215	pseudogenic gene segment	Chr14:44542610-44542674 (+)
C57BL/6NJ	ENSMUSG00215049334	pseudogenic gene segment	Chr14:42742155-42742217 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002197	pseudogenic gene segment	Chr14:45615469-45615531 (+)
CAST/EiJ	ENSTCUG00005050247	pseudogenic gene segment	Chr14:44538848-44538911 (+)
CBA/J	ENSMUSG00210046760	pseudogenic gene segment	Chr14:43223169-43223233 (+)
DBA/2J	ENSMUSG00185056256	pseudogenic gene segment	Chr14:48263822-48263886 (+)
FVB/NJ	ENSMUSG00205047392	pseudogenic gene segment	Chr14:42606086-42606151 (+)
JF1/MsJ	ENSUMUG00000054756	pseudogenic gene segment	Chr14:59522384-59522446 (+)
LP/J	ENSMUSG00230052895	pseudogenic gene segment	Chr14:60378126-60378190 (+)
NOD/ShiLtJ	ENSMUSG00190048331	pseudogenic gene segment	Chr14:42966904-42966969 (+)
NZO/HlLtJ	ENSMUSG00225051651	pseudogenic gene segment	Chr14:50676216-50676280 (+)
PWK/PhJ	ENSLUMG00010051831	pseudogenic gene segment	Chr14:42446227-42446291 (+)
SPRET/EiJ	ENSMSPG00010049115	pseudogenic gene segment	Chr14:45837019-45837088 (+)
WSB/EiJ	ENSIUOG00005046993	pseudogenic gene segment	Chr14:42437908-42437971 (+)

Homology

• Gene Tree
  Traj36
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Traj36
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000090494 (Evidence)
• NCBI Gene
  100124353

Representative Sequences			Length	Strain/Species
genomic	100124353	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J

References

• Summaries
  All 19

  Phenotypes 4
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj36:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125578	Chr14:54419087-54419090 (+)	-770 bp