Platr30 Gene Detail

Summary

• Symbol
  Platr30
• Name
  pluripotency associated transcript 30
• Synonyms
  Gm17580

• Feature Type
  lncRNA gene
• IDs
  MGI:4937214
  NCBI Gene: 100504145
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:96252603-96265795 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937214	lncRNA gene	Chr3:96252603-96265796 (+)
129S1/SvImJ	ENSMUSG00200045732	lncRNA gene	Chr3:92913753-92924983 (-)
A/J	ENSMUSG00195049242	lncRNA gene	Chr3:93245678-93258868 (+)
A/J	ENSMUSG00195050774	lncRNA gene	Chr3:93280111-93293245 (-)
AKR/J	ENSMUSG00220043832	lncRNA gene	Chr3:91630362-91643576 (+)
AKR/J	ENSMUSG00220044625	lncRNA gene	Chr3:91660802-91673962 (-)
BALB/cJ	ENSMUSG00180045439	lncRNA gene	Chr3:93261889-93275015 (-)
BALB/cJ	ENSMUSG00180042317	lncRNA gene	Chr3:93239640-93253011 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215040358	lncRNA gene	Chr3:93638198-93651360 (-)
C57BL/6NJ	ENSMUSG00215039448	lncRNA gene	Chr3:93607777-93620970 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021192	lncRNA gene	Chr3:93432075-93445270 (+)
CAST/EiJ	ENSTCUG00005022026	lncRNA gene	Chr3:93462491-93475653 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185046542	lncRNA gene	Chr3:93848799-93861992 (+)
DBA/2J	ENSMUSG00185048146	lncRNA gene	Chr3:93879219-93892380 (-)
FVB/NJ	ENSMUSG00205051638	lncRNA gene	Chr3:92499907-92513095 (-)
JF1/MsJ	ENSUMUG00000048648	lncRNA gene	Chr3:92714534-92727734 (+)
JF1/MsJ	ENSUMUG00000053139	lncRNA gene	Chr3:92736128-92749268 (-)
LP/J	ENSMUSG00230045788	lncRNA gene	Chr3:95781130-95794317 (+)
LP/J	ENSMUSG00230047473	lncRNA gene	Chr3:95815562-95828693 (-)
NOD/ShiLtJ	ENSMUSG00190050921	lncRNA gene	Chr3:93977102-93990260 (-)
NOD/ShiLtJ	ENSMUSG00190050546	lncRNA gene	Chr3:93946686-93959877 (+)
NZO/HlLtJ	ENSMUSG00225013053	lncRNA gene	Chr3:98224002-98237127 (-)
NZO/HlLtJ	ENSMUSG00225012357	lncRNA gene	Chr3:98201757-98215128 (+)
PWK/PhJ	ENSLUMG00010030345	lncRNA gene	Chr3:92696130-92709471 (+)
PWK/PhJ	ENSLUMG00010033548	lncRNA gene	Chr3:92728610-92741891 (-)
SPRET/EiJ	ENSMSPG00010048439	lncRNA gene	Chr3:93027077-93040292 (-)
SPRET/EiJ	ENSMSPG00010045636	lncRNA gene	Chr3:93004185-93017462 (+)
WSB/EiJ	ENSIUOG00005035274	lncRNA gene	Chr3:93378210-93391363 (-)
WSB/EiJ	ENSIUOG00005032307	lncRNA gene	Chr3:93347749-93360965 (+)

Homology

• Gene Tree
  Platr30
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving Platr30
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000097851 (Evidence)
• NCBI Gene
  100504145

Representative Sequences			Length	Strain/Species
genomic	100504145	NCBI Gene Model | MGI Sequence Detail	13193	C57BL/6J
transcript	NR_152105	RefSeq | MGI Sequence Detail	1989	ZRU/MplStud

Molecular
Reagents

• All nucleic 10

  cDNA 10

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426