Gm17540 Gene Detail

Summary

• Symbol
  Gm17540
• Name
  predicted gene, 17540

• Feature Type
  lncRNA gene
• IDs
  MGI:4937174
  NCBI Gene: 100503925
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:40442451-40444916 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 21.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937174	lncRNA gene	Chr9:40442451-40444916 (+)
129S1/SvImJ	ENSMUSG00200040552	lncRNA gene	Chr9:37520293-37522761 (+)
A/J	ENSMUSG00195050635	lncRNA gene	Chr9:37277167-37279635 (+)
AKR/J	ENSMUSG00220046343	lncRNA gene	Chr9:37353554-37356027 (+)
BALB/cJ	ENSMUSG00180046836	lncRNA gene	Chr9:37400414-37402882 (+)
C3H/HeJ	ENSMUSG00175049676	lncRNA gene	Chr9:37401000-37403468 (+)
C57BL/6NJ	ENSMUSG00215034496	lncRNA gene	Chr9:37352204-37354669 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006759	lincRNA gene	Chr9:37393064-37395526 (+)
CAST/EiJ	ENSTCUG00005045210	lncRNA gene	Chr9:37331898-37334374 (+)
CBA/J	ENSMUSG00210047683	lncRNA gene	Chr9:37448142-37450610 (+)
DBA/2J	ENSMUSG00185038817	lncRNA gene	Chr9:37491425-37493898 (+)
FVB/NJ	ENSMUSG00205042703	lncRNA gene	Chr9:37762280-37764748 (+)
JF1/MsJ	ENSUMUG00000048315	lncRNA gene	Chr9:37549381-37551846 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190033850	lncRNA gene	Chr9:37577265-37579738 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010048127	lncRNA gene	Chr9:37507999-37510461 (+)
SPRET/EiJ	ENSMSPG00010038225	lncRNA gene	Chr9:38234939-38237404 (+)
WSB/EiJ	ENSIUOG00005044527	lncRNA gene	Chr9:36997157-36999625 (+)

Homology

• Gene Tree
  Gm17540
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000097205 (Evidence)
• NCBI Gene
  100503925

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097205	Ensembl Gene Model | MGI Sequence Detail	2466	C57BL/6J
transcript	ENSMUST00000181617	Ensembl | MGI Sequence Detail	1528	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;