Gm17501 Gene Detail

Summary

• Symbol
  Gm17501
• Name
  predicted gene, 17501

• Feature Type
  lncRNA gene
• IDs
  MGI:4937135
  NCBI Gene: 100216343
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:145355863-145383807 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 70.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  743 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937135	lncRNA gene	Chr3:145354797-145441458 (+)
129S1/SvImJ	ENSMUSG00200004058	lncRNA gene	Chr3:142230323-142269595 (+)
A/J	ENSMUSG00195003510	lncRNA gene	Chr3:142377175-142416462 (+)
AKR/J	ENSMUSG00220004228	lncRNA gene	Chr3:140789306-140828590 (+)
BALB/cJ	ENSMUSG00180028369	lncRNA gene	Chr3:142247642-142286921 (+)
C3H/HeJ	ENSMUSG00175019898	lncRNA gene	Chr3:141831133-141870410 (+)
C57BL/6NJ	ENSMUSG00215018031	lncRNA gene	Chr3:142540138-142567835 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005780	lincRNA gene	Chr3:138855044-138880748 (+)
CAST/EiJ	ENSTCUG00005031261	lncRNA gene	Chr3:142945564-142972672 (+)
CBA/J	ENSMUSG00210004910	lncRNA gene	Chr3:142507092-142546381 (+)
DBA/2J	ENSMUSG00185025853	lncRNA gene	Chr3:143098869-143126561 (+)
FVB/NJ	ENSMUSG00205027549	lncRNA gene	Chr3:141375355-141403050 (+)
JF1/MsJ	ENSUMUG00000005859	lncRNA gene	Chr3:141900633-141928698 (+)
LP/J	ENSMUSG00230020248	lncRNA gene	Chr3:145016785-145056055 (+)
NOD/ShiLtJ	ENSMUSG00190004922	lncRNA gene	Chr3:143467452-143506728 (+)
NZO/HlLtJ	ENSMUSG00225003132	lncRNA gene	Chr3:147527404-147566693 (+)
PWK/PhJ	ENSLUMG00010021951	lncRNA gene	Chr3:141818544-141845198 (+)
SPRET/EiJ	ENSMSPG00010008891	lncRNA gene	Chr3:143129073-143156855 (+)
WSB/EiJ	ENSIUOG00005015398	lncRNA gene	Chr3:142564507-142592213 (+)

Homology

• Gene Tree
  Gm17501
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm17501
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  606
• Tissues
  8
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097183 (Evidence)
• NCBI Gene
  100216343

Representative Sequences			Length	Strain/Species
genomic	100216343	NCBI Gene Model | MGI Sequence Detail	27945	C57BL/6J
transcript	AK040843	GenBank | ENA | DDBJ | MGI Sequence Detail	1321	C57BL/6J
polypeptide	B8XR25	UniProt | EBI | MGI Sequence Detail	69	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 4

  Primer pair 1

References

• Summaries
  All 10

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm17501:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32291	Chr3:145357844-145357864 (+)	1,991 bp
Tssr32292	Chr3:145358116-145358132 (+)	2,261 bp
Tssr32293	Chr3:145358162-145358211 (+)	2,324 bp