Gm17484 Gene Detail

Summary

• Symbol
  Gm17484
• Name
  predicted gene, 17484

• Feature Type
  lncRNA gene
• IDs
  MGI:4937118
  NCBI Gene: 100503003
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:26244508-26259730 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 14.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  488 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937118	lncRNA gene	Chr8:26244377-26259735 (+)
129S1/SvImJ	ENSMUSG00200021907	lncRNA gene	Chr8:21285498-21300745 (+)
A/J	ENSMUSG00195005611	lncRNA gene	Chr8:21827369-21842619 (+)
AKR/J	ENSMUSG00220025804	lncRNA gene	Chr8:21450946-21466195 (+)
BALB/cJ	ENSMUSG00180005863	lncRNA gene	Chr8:21351939-21367187 (+)
C3H/HeJ	ENSMUSG00175006709	lncRNA gene	Chr8:21414689-21429935 (+)
C57BL/6NJ	ENSMUSG00215013541	lncRNA gene	Chr8:21329624-21344864 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030928	protein coding gene	Chr8:20228252-20239232 (+)
CAST/EiJ	ENSTCUG00005024717	lncRNA gene	Chr8:21631859-21646926 (+)
CBA/J	ENSMUSG00210014028	lncRNA gene	Chr8:21351223-21366469 (+)
DBA/2J	ENSMUSG00185039018	lncRNA gene	Chr8:27151920-27167167 (+)
FVB/NJ	ENSMUSG00205004694	lncRNA gene	Chr8:20850091-20865338 (+)
JF1/MsJ	ENSUMUG00000030245	lncRNA gene	Chr8:29025891-29040883 (+)
LP/J	ENSMUSG00230016181	lncRNA gene	Chr8:30911421-30926668 (+)
NOD/ShiLtJ	ENSMUSG00190004542	lncRNA gene	Chr8:21384705-21399952 (+)
NZO/HlLtJ	ENSMUSG00225022262	lncRNA gene	Chr8:34532770-34548017 (+)
PWK/PhJ	ENSLUMG00010026407	lncRNA gene	Chr8:21400445-21415418 (+)
SPRET/EiJ	ENSMSPG00010017831	lncRNA gene	Chr8:21677839-21692558 (+)
WSB/EiJ	ENSIUOG00005011243	lncRNA gene	Chr8:22098002-22113242 (+)

Homology

• Gene Tree
  Gm17484
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000091514 (Evidence)
• NCBI Gene
  100503003

Representative Sequences			Length	Strain/Species
genomic	100503003	NCBI Gene Model | MGI Sequence Detail	15223	C57BL/6J
transcript	NR_154462	RefSeq | MGI Sequence Detail	2320	C57BL/6

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17484:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76711	Chr8:26244490-26244513 (+)	-6 bp
Tssr76712	Chr8:26244520-26244542 (+)	23 bp