Traj54 Pseudogene Detail

Summary

• Symbol
  Traj54
• Name
  T cell receptor alpha joining 54
• Synonyms
  Gm17479

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4937113
  NCBI Gene: 100124333
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54399447-54399500 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937113	pseudogenic gene segment	Chr14:54399447-54399500 (+)
129S1/SvImJ	ENSMUSG00200045191	pseudogenic gene segment	Chr14:42991767-42991820 (+)
A/J	ENSMUSG00195033431	pseudogenic gene segment	Chr14:43216036-43216089 (+)
AKR/J	ENSMUSG00220030664	pseudogenic gene segment	Chr14:42543962-42544015 (+)
BALB/cJ	ENSMUSG00180053012	pseudogenic gene segment	Chr14:42839806-42839859 (+)
C3H/HeJ	ENSMUSG00175050234	pseudogenic gene segment	Chr14:44522251-44522304 (+)
C57BL/6NJ	ENSMUSG00215049089	pseudogenic gene segment	Chr14:42721740-42721793 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002195	pseudogenic gene segment	Chr14:45595220-45595333 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210048755	pseudogenic gene segment	Chr14:43202807-43202860 (+)
DBA/2J	ENSMUSG00185054579	pseudogenic gene segment	Chr14:48243453-48243506 (+)
FVB/NJ	ENSMUSG00205047214	pseudogenic gene segment	Chr14:42585709-42585762 (+)
JF1/MsJ	ENSUMUG00000051618	pseudogenic gene segment	Chr14:59501934-59501987 (+)
LP/J	ENSMUSG00230052896	pseudogenic gene segment	Chr14:60357764-60357817 (+)
NOD/ShiLtJ	ENSMUSG00190048062	pseudogenic gene segment	Chr14:42946529-42946582 (+)
NZO/HlLtJ	ENSMUSG00225051657	pseudogenic gene segment	Chr14:50655850-50655903 (+)
PWK/PhJ	ENSLUMG00010048448	pseudogenic gene segment	Chr14:42425865-42425918 (+)
SPRET/EiJ	ENSMSPG00010049226	pseudogenic gene segment	Chr14:45816531-45816584 (+)
WSB/EiJ	ENSIUOG00005043120	pseudogenic gene segment	Chr14:42417538-42417591 (+)

Homology

• Gene Tree
  Traj54
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Traj54
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000091326 (Evidence)
• NCBI Gene
  100124333

Representative Sequences			Length	Strain/Species
genomic	100124333	NCBI Gene Model | MGI Sequence Detail	54	C57BL/6J

References

• Summaries
  All 19

  Phenotypes 4
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61