Gm17473 Gene Detail

Summary

• Symbol
  Gm17473
• Name
  predicted gene, 17473

• Feature Type
  lncRNA gene
• IDs
  MGI:4937107
  NCBI Gene: 100503767
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:42538438-42653189 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 16.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3401 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937107	lncRNA gene	Chr15:42538438-42653189 (+)
129S1/SvImJ	ENSMUSG00200028067	lncRNA gene	Chr15:39510868-39539170 (+)
A/J	ENSMUSG00195037695	lncRNA gene	Chr15:39491138-39519476 (+)
AKR/J	ENSMUSG00220031664	lncRNA gene	Chr15:39411076-39439457 (+)
BALB/cJ	ENSMUSG00180034216	lncRNA gene	Chr15:39460004-39488380 (+)
C3H/HeJ	ENSMUSG00175028171	lncRNA gene	Chr15:39668440-39696820 (+)
C57BL/6NJ	ENSMUSG00215021485	lncRNA gene	Chr15:39454316-39482691 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005086	lincRNA gene	Chr15:37274779-37303327 (+)
CAST/EiJ	ENSTCUG00005011184	lncRNA gene	Chr15:39481766-39510170 (+)
CBA/J	ENSMUSG00210018265	lncRNA gene	Chr15:39592696-39621031 (+)
DBA/2J	ENSMUSG00185034757	lncRNA gene	Chr15:39565776-39594113 (+)
FVB/NJ	ENSMUSG00205030512	lncRNA gene	Chr15:39450780-39479117 (+)
JF1/MsJ	ENSUMUG00000036410	lncRNA gene	Chr15:39450260-39478562 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190032128	lncRNA gene	Chr15:39519943-39548278 (+)
NZO/HlLtJ	ENSMUSG00225038024	lncRNA gene	Chr15:43244030-43272365 (+)
PWK/PhJ	ENSLUMG00010033267	lncRNA gene	Chr15:39602595-39630968 (+)
SPRET/EiJ	ENSMSPG00010013664	lncRNA gene	Chr15:40422695-40451164 (+)
WSB/EiJ	ENSIUOG00005035257	lncRNA gene	Chr15:39533747-39562082 (+)

Homology

• Gene Tree
  Gm17473
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving Gm17473
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000097805 (Evidence)
• NCBI Gene
  100503767

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097805	Ensembl Gene Model | MGI Sequence Detail	114752	C57BL/6J
transcript	ENSMUST00000228544	Ensembl | MGI Sequence Detail	2646	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6