Traj55 Pseudogene Detail

Summary

• Symbol
  Traj55
• Name
  T cell receptor alpha joining 55
• Synonyms
  Gm17471

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4937105
  NCBI Gene: 100124297
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54398896-54398958 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937105	pseudogenic gene segment	Chr14:54398896-54398958 (+)
129S1/SvImJ	ENSMUSG00200045095	pseudogenic gene segment	Chr14:42991216-42991278 (+)
A/J	ENSMUSG00195033313	pseudogenic gene segment	Chr14:43215485-43215547 (+)
AKR/J	ENSMUSG00220030433	pseudogenic gene segment	Chr14:42543411-42543473 (+)
BALB/cJ	ENSMUSG00180052968	pseudogenic gene segment	Chr14:42839255-42839317 (+)
C3H/HeJ	ENSMUSG00175050102	pseudogenic gene segment	Chr14:44521700-44521762 (+)
C57BL/6NJ	ENSMUSG00215048998	pseudogenic gene segment	Chr14:42721189-42721251 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002194	pseudogenic gene segment	Chr14:45594685-45594747 (+)
CAST/EiJ	ENSTCUG00005050771	pseudogenic gene segment	Chr14:44517921-44517983 (+)
CBA/J	ENSMUSG00210048686	pseudogenic gene segment	Chr14:43202256-43202318 (+)
DBA/2J	ENSMUSG00185054505	pseudogenic gene segment	Chr14:48242902-48242964 (+)
FVB/NJ	ENSMUSG00205047057	pseudogenic gene segment	Chr14:42585158-42585220 (+)
JF1/MsJ	ENSUMUG00000051417	pseudogenic gene segment	Chr14:59501383-59501445 (+)
LP/J	ENSMUSG00230052881	pseudogenic gene segment	Chr14:60357213-60357275 (+)
NOD/ShiLtJ	ENSMUSG00190047906	pseudogenic gene segment	Chr14:42945978-42946040 (+)
NZO/HlLtJ	ENSMUSG00225051613	pseudogenic gene segment	Chr14:50655299-50655361 (+)
PWK/PhJ	ENSLUMG00010048302	pseudogenic gene segment	Chr14:42425314-42425376 (+)
SPRET/EiJ	ENSMSPG00010049179	pseudogenic gene segment	Chr14:45815980-45816042 (+)
WSB/EiJ	ENSIUOG00005042983	pseudogenic gene segment	Chr14:42416987-42417049 (+)

Homology

• Gene Tree
  Traj55
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Traj55
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000091005 (Evidence)
• NCBI Gene
  100124297

Representative Sequences			Length	Strain/Species
genomic	100124297	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J

References

• Summaries
  All 19

  Phenotypes 4
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61