Snhg4 Gene Detail

Summary

• Symbol
  Snhg4
• Name
  small nucleolar RNA host gene 4
• Synonyms
  Gm17457

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:4937091
  NCBI Gene: 100503380
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr18:35686462-35691267 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 19.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  212 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937091	lncRNA gene	Chr18:35686424-35720761 (+)
129S1/SvImJ	ENSMUSG00200045434	lncRNA gene	Chr18:32685180-32690126 (+)
A/J	ENSMUSG00195038037	lncRNA gene	Chr18:32851899-32856844 (+)
AKR/J	ENSMUSG00220017189	lncRNA gene	Chr18:32828218-32833164 (+)
BALB/cJ	ENSMUSG00180023079	lncRNA gene	Chr18:33301535-33306480 (+)
C3H/HeJ	ENSMUSG00175042727	lncRNA gene	Chr18:32809093-32814038 (+)
C57BL/6NJ	ENSMUSG00215032575	lncRNA gene	Chr18:32555288-32560233 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023926	lncRNA gene	Chr18:32459670-32464308 (+)
CBA/J	ENSMUSG00210021895	lncRNA gene	Chr18:32843699-32848644 (+)
DBA/2J	ENSMUSG00185021058	lncRNA gene	Chr18:32778262-32783207 (+)
FVB/NJ	ENSMUSG00205035811	lncRNA gene	Chr18:32490079-32495024 (+)
JF1/MsJ	ENSUMUG00000046122	lncRNA gene	Chr18:32934105-32938767 (+)
LP/J	ENSMUSG00230049341	lncRNA gene	Chr18:34881993-34886938 (+)
NOD/ShiLtJ	ENSMUSG00190023640	lncRNA gene	Chr18:32562915-32567860 (+)
NZO/HlLtJ	ENSMUSG00225046865	lncRNA gene	Chr18:34786797-34791742 (+)
PWK/PhJ	ENSLUMG00010013476	lncRNA gene	Chr18:33079315-33083957 (+)
SPRET/EiJ	ENSMSPG00010022562	lncRNA gene	Chr18:33134010-33138659 (+)
WSB/EiJ	ENSIUOG00005008111	lncRNA gene	Chr18:32549665-32554610 (+)

Expression

• cDNA Data
  4

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  4
• UniProt
  5

• Ensembl
  ENSMUSG00000117694 (Evidence), ENSMUSG00000117869 (Evidence)
• NCBI Gene
  100503380

Representative Sequences			Length	Strain/Species
genomic	100503380	NCBI Gene Model | MGI Sequence Detail	4806	C57BL/6J
transcript	NR_182663	RefSeq | MGI Sequence Detail	1054	ZRU/MplStud
polypeptide	A0A494B9X1	UniProt | EBI | MGI Sequence Detail	403	Not Applicable

Protein
Information

• UniProt
  5 Sequences
• InterPro Domains
  IPR034928 Matrin-3, RNA recognition motif 1
  IPR034930 Matrin-3, RNA recognition motif 2
  IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
  IPR035979 RNA-binding domain superfamily
  IPR000504 RNA recognition motif domain

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Snhg4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150523	Chr18:35686454-35686474 (+)	2 bp
Tssr150524	Chr18:35686489-35686498 (+)	32 bp
Tssr150525	Chr18:35686636-35686649 (+)	181 bp