Gm17455 Gene Detail

Summary

• Symbol
  Gm17455
• Name
  predicted gene, 17455

• Feature Type
  protein coding gene
• IDs
  MGI:4937089
  NCBI Gene: 100302688
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:60235643-60239338 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 30.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  267 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937089	protein coding gene	Chr10:60235505-60239338 (+)
129S1/SvImJ	ENSMUSG00200027156	protein coding gene	Chr10:56900542-56904367 (+)
A/J	ENSMUSG00195025456	protein coding gene	Chr10:57212987-57216812 (+)
AKR/J	ENSMUSG00220040123	protein coding gene	Chr10:56905146-56908971 (+)
BALB/cJ	ENSMUSG00180026561	protein coding gene	Chr10:57255287-57259104 (+)
C3H/HeJ	ENSMUSG00175024620	protein coding gene	Chr10:57107789-57111609 (+)
C57BL/6NJ	ENSMUSG00215027468	protein coding gene	Chr10:56853404-56857234 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015357	protein coding gene	Chr10:54872891-54876528 (+)
CAST/EiJ	ENSTCUG00005029021	protein coding gene	Chr10:56901054-56904885 (+)
CBA/J	ENSMUSG00210035464	protein coding gene	Chr10:56986112-56989937 (+)
DBA/2J	ENSMUSG00185039081	protein coding gene	Chr10:57332852-57336677 (+)
FVB/NJ	ENSMUSG00205028706	protein coding gene	Chr10:57005281-57009106 (+)
JF1/MsJ	ENSUMUG00000014552	protein coding gene	Chr10:58572922-58576694 (+)
LP/J	ENSMUSG00230021690	protein coding gene	Chr10:59136054-59139879 (+)
NOD/ShiLtJ	ENSMUSG00190036919	protein coding gene	Chr10:57318692-57322513 (+)
NZO/HlLtJ	ENSMUSG00225044856	protein coding gene	Chr10:63416999-63420824 (+)
PWK/PhJ	ENSLUMG00010023369	protein coding gene	Chr10:56925935-56929730 (+)
SPRET/EiJ	ENSMSPG00010024350	protein coding gene	Chr10:58512812-58516644 (+)
WSB/EiJ	ENSIUOG00005037507	protein coding gene	Chr10:56885137-56888867 (+)

Homology

• Human Ortholog
  C10orf105, chromosome 10 open reading frame 105

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C10orf105, chromosome 10 open reading frame 105
  
• Links
  HGNC:20304

  NCBI Gene ID: 414152

  UniProt: Q8TEF2

  
  
• Chr Location
  10q22.1; chr10:71711701-71737850 (-)  GRCh38

---

• MGI Vertebrate Homology
  Gm17455 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: C10orf105
• Gene Tree
  Gm17455
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17455
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  10
• UniProt
  3
• CCDS
  CCDS48570.1

• Ensembl
  ENSMUSG00000090439 (Evidence)
• NCBI Gene
  100302688

Representative Sequences			Length	Strain/Species
genomic	100302688	NCBI Gene Model | MGI Sequence Detail	3696	C57BL/6J
transcript	NM_001399669	RefSeq | MGI Sequence Detail	763	C57BL/6
polypeptide	NP_001386600	RefSeq | MGI Sequence Detail	128	C57BL/6

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR039954 Protein of unknown function DUF5527

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm17455:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93633	Chr10:60235528-60235551 (+)	-103 bp
Tssr93634	Chr10:60235581-60235584 (+)	-60 bp
Tssr93635	Chr10:60235628-60235655 (+)	-1 bp
Tssr93636	Chr10:60236532-60236543 (+)	895 bp