Spata31h2 Gene Detail

Summary

• Symbol
  Spata31h2
• Name
  SPATA31 subfamily H member 2
• Synonyms
  Gm17434

• Feature Type
  protein coding gene
• IDs
  MGI:4937068
  NCBI Gene: 102635566
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:23519347-23544648 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 10.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  316 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937068	protein coding gene	Chr5:23519347-23544648 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  SPATA31H1, SPATA31 subfamily H member 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SPATA31H1, SPATA31 subfamily H member 1
  
• Synonyms
  C2orf16
• Links
  HGNC:25275

  NCBI Gene ID: 84226

  neXtProt AC: NX_Q68DN1

  UniProt: Q68DN1

  
  
• Chr Location
  2p23.3; chr2:27537386-27582722 (+)  GRCh38

---

• MGI Vertebrate Homology
  Spata31h2 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SPATA31H1

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Spata31h2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  102635566

Representative Sequences			Length	Strain/Species
genomic	102635566	NCBI Gene Model | MGI Sequence Detail	25302	C57BL/6J
transcript	XM_017321194	RefSeq | MGI Sequence Detail	10817	C57BL/6J
polypeptide	XP_017176683	RefSeq | MGI Sequence Detail	502	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Spata31h2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45357	Chr5:23519320-23519331 (+)	-21 bp
Tssr45358	Chr5:23519344-23519354 (+)	2 bp