Gm17415 Pseudogene Detail

Summary

• Symbol
  Gm17415
• Name
  predicted gene, 17415

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:4937049
  NCBI Gene: 108167670
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:93349422-93350210 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 47.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937049	pseudogene	Chr1:93349395-93350259 (+)
129S1/SvImJ	ENSMUSG00200038937	pseudogene	Chr1:90565705-90566493 (+)
A/J	ENSMUSG00195033815	pseudogene	Chr1:90124625-90125413 (+)
AKR/J	ENSMUSG00220045988	pseudogene	Chr1:90279351-90280139 (+)
BALB/cJ	ENSMUSG00180018022	pseudogene	Chr1:90441830-90442618 (+)
C3H/HeJ	ENSMUSG00175001519	pseudogene	Chr1:90319742-90320530 (+)
C57BL/6NJ	ENSMUSG00215034254	pseudogene	Chr1:90251946-90252734 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007872	pseudogene	Chr1:89902521-89903309 (+)
CBA/J	ENSMUSG00210012401	pseudogene	Chr1:90164956-90165744 (+)
DBA/2J	ENSMUSG00185014216	pseudogene	Chr1:94637965-94638753 (+)
FVB/NJ	ENSMUSG00205044000	pseudogene	Chr1:89567561-89568349 (+)
JF1/MsJ	ENSUMUG00000023940	pseudogene	Chr1:93377705-93378491 (+)
LP/J	ENSMUSG00230024149	pseudogene	Chr1:93901802-93902590 (+)
NOD/ShiLtJ	ENSMUSG00190032827	pseudogene	Chr1:90209564-90210352 (+)
NZO/HlLtJ	ENSMUSG00225003849	pseudogene	Chr1:97800850-97801638 (+)
PWK/PhJ	ENSLUMG00010047125	pseudogene	Chr1:89765470-89766258 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005041638	pseudogene	Chr1:89862080-89862868 (+)

Homology

• Gene Tree
  Gm17415
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm17415
• Incidental Mutations
  APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000090489 (Evidence)
• NCBI Gene
  108167670

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090489	Ensembl Gene Model | MGI Sequence Detail	789	C57BL/6J
transcript	ENSMUST00000096427	Ensembl | MGI Sequence Detail	789	Not Applicable
polypeptide	XP_036011877	RefSeq | MGI Sequence Detail	261	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45