Gm17396 Gene Detail

Summary

• Symbol
  Gm17396
• Name
  predicted gene, 17396

• Feature Type
  lncRNA gene
• IDs
  MGI:4937030
  NCBI Gene: 102635502
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:117081601-117083766 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 69.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937030	lncRNA gene	Chr9:117081296-117104923 (+)
129S1/SvImJ	ENSMUSG00200032947	lncRNA gene	Chr9:114202140-114204321 (+)
A/J	ENSMUSG00195029173	lncRNA gene	Chr9:113378849-113381014 (+)
AKR/J	ENSMUSG00220020390	lncRNA gene	Chr9:113847264-113849462 (+)
BALB/cJ	ENSMUSG00180031793	lncRNA gene	Chr9:113916320-113918511 (+)
C3H/HeJ	ENSMUSG00175020014	lncRNA gene	Chr9:114159677-114161868 (+)
C57BL/6NJ	ENSMUSG00215034115	lncRNA gene	Chr9:114028608-114030791 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013881	unclassified non-coding RNA gene	Chr9:112686178-112688305 (+)
CAST/EiJ	ENSTCUG00005017542	lncRNA gene	Chr9:113810484-113812676 (+)
CBA/J	ENSMUSG00210044252	lncRNA gene	Chr9:113873997-113876182 (+)
DBA/2J	ENSMUSG00185017477	lncRNA gene	Chr9:114208103-114210288 (+)
FVB/NJ	ENSMUSG00205035890	lncRNA gene	Chr9:114047732-114049925 (+)
JF1/MsJ	ENSUMUG00000052227	lncRNA gene	Chr9:114042420-114044612 (+)
LP/J	ENSMUSG00230038495	lncRNA gene	Chr9:114330684-114332865 (+)
NOD/ShiLtJ	ENSMUSG00190015300	lncRNA gene	Chr9:113785536-113787715 (+)
NZO/HlLtJ	ENSMUSG00225024124	lncRNA gene	Chr9:114590589-114592772 (+)
PWK/PhJ	ENSLUMG00010040243	lncRNA gene	Chr9:113985200-113987403 (+)
SPRET/EiJ	ENSMSPG00010027074	lncRNA gene	Chr9:115651956-115654234 (+)
WSB/EiJ	ENSIUOG00005023103	lncRNA gene	Chr9:113271139-113273341 (+)

Homology

• Gene Tree
  Gm17396
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000079669 (Evidence)
• NCBI Gene
  102635502

Representative Sequences			Length	Strain/Species
genomic	102635502	NCBI Gene Model | MGI Sequence Detail	2166	C57BL/6J
transcript	NR_166691	RefSeq | MGI Sequence Detail	1660	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm17396:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87601	Chr9:117081589-117081627 (+)	7 bp