Gm17382 Gene Detail

Summary

• Symbol
  Gm17382
• Name
  predicted gene, 17382

• Feature Type
  lncRNA gene
• IDs
  MGI:4937016
  NCBI Gene: 102638016
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:27079151-27105220 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  896 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4937016	lncRNA gene	Chr17:27074633-27105541 (-)
129S1/SvImJ	ENSMUSG00200053941	lncRNA gene	Chr17:22525090-22551056 (-)
A/J	ENSMUSG00195054591	lncRNA gene	Chr17:23545742-23571769 (-)
AKR/J	ENSMUSG00220053957	lncRNA gene	Chr17:22587678-22613682 (-)
BALB/cJ	ENSMUSG00180051102	lncRNA gene	Chr17:22823217-22849206 (-)
C3H/HeJ	ENSMUSG00175053792	lncRNA gene	Chr17:22581470-22607679 (-)
C57BL/6NJ	ENSMUSG00215054580	lncRNA gene	Chr17:22589622-22615617 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005184	lincRNA gene	Chr17:22703898-22731402 (-)
CAST/EiJ	ENSTCUG00005051947	lncRNA gene	Chr17:23190239-23216405 (-)
CBA/J	ENSMUSG00210051416	lncRNA gene	Chr17:22420284-22446495 (-)
DBA/2J	ENSMUSG00185055261	lncRNA gene	Chr17:24633917-24659951 (-)
FVB/NJ	ENSMUSG00205053539	lncRNA gene	Chr17:22891042-22917034 (-)
JF1/MsJ	ENSUMUG00000058052	lncRNA gene	Chr17:24093797-24119968 (-)
LP/J	ENSMUSG00230055088	lncRNA gene	Chr17:26029590-26055551 (-)
NOD/ShiLtJ	ENSMUSG00190054478	lncRNA gene	Chr17:22521254-22547249 (-)
NZO/HlLtJ	ENSMUSG00225054433	lncRNA gene	Chr17:27959436-27985581 (-)
PWK/PhJ	ENSLUMG00010053464	lncRNA gene	Chr17:22006774-22032714 (-)
SPRET/EiJ	ENSMSPG00010049944	lncRNA gene	Chr17:23323260-23350373 (-)
WSB/EiJ	ENSIUOG00005051989	lncRNA gene	Chr17:23284832-23310783 (-)

Homology

• Gene Tree
  Gm17382
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  1
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm17382
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000078838 (Evidence)
• NCBI Gene
  102638016

Representative Sequences			Length	Strain/Species
genomic	102638016	NCBI Gene Model | MGI Sequence Detail	26070	C57BL/6J
transcript	NR_168075	RefSeq | MGI Sequence Detail	1738	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm17382:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146974	Chr17:27105209-27105222 (-)	4 bp