Traj61 Pseudogene Detail

Summary

• Symbol
  Traj61
• Name
  T cell receptor alpha joining 61
• Synonyms
  Gm17363

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4936997
  NCBI Gene: 100124287
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54392462-54392533 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936997	pseudogenic gene segment	Chr14:54392462-54392533 (+)
129S1/SvImJ	ENSMUSG00200042552	pseudogenic gene segment	Chr14:42984798-42984868 (+)
A/J	ENSMUSG00195034380	pseudogenic gene segment	Chr14:43209064-43209134 (+)
AKR/J	ENSMUSG00220030918	pseudogenic gene segment	Chr14:42536988-42537058 (+)
BALB/cJ	ENSMUSG00180053558	pseudogenic gene segment	Chr14:42832832-42832902 (+)
C3H/HeJ	ENSMUSG00175052789	pseudogenic gene segment	Chr14:44515279-44515349 (+)
C57BL/6NJ	ENSMUSG00215049430	pseudogenic gene segment	Chr14:42714754-42714825 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002192	pseudogenic gene segment	Chr14:45588255-45588322 (+)
CAST/EiJ	ENSTCUG00005051036	pseudogenic gene segment	Chr14:44511447-44511519 (+)
CBA/J	ENSMUSG00210049404	pseudogenic gene segment	Chr14:43195834-43195904 (+)
DBA/2J	ENSMUSG00185056131	pseudogenic gene segment	Chr14:48236484-48236554 (+)
FVB/NJ	ENSMUSG00205044369	pseudogenic gene segment	Chr14:42578745-42578815 (+)
JF1/MsJ	ENSUMUG00000055599	pseudogenic gene segment	Chr14:59494949-59495020 (+)
LP/J	ENSMUSG00230052905	pseudogenic gene segment	Chr14:60350793-60350863 (+)
NOD/ShiLtJ	ENSMUSG00190050223	pseudogenic gene segment	Chr14:42939565-42939635 (+)
NZO/HlLtJ	ENSMUSG00225051708	pseudogenic gene segment	Chr14:50648879-50648949 (+)
PWK/PhJ	ENSLUMG00010050766	pseudogenic gene segment	Chr14:42418898-42418968 (+)
SPRET/EiJ	ENSMSPG00010046995	pseudogenic gene segment	Chr14:45809604-45809685 (+)
WSB/EiJ	ENSIUOG00005044704	pseudogenic gene segment	Chr14:42410575-42410646 (+)

Homology

• Gene Tree
  Traj61
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Traj61
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000090574 (Evidence)
• NCBI Gene
  100124287

Representative Sequences			Length	Strain/Species
genomic	100124287	NCBI Gene Model | MGI Sequence Detail	72	C57BL/6J

References

• Summaries
  All 19

  Phenotypes 4
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61