Gm17354 Gene Detail

Summary

• Symbol
  Gm17354
• Name
  predicted gene, 17354

• Feature Type
  lncRNA gene
• IDs
  MGI:4936988
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:108491040-108494638 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 50.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936988	lncRNA gene	Chr4:108491040-108494638 (-)
129S1/SvImJ	ENSMUSG00200050587	lncRNA gene	Chr4:103543385-103547050 (-)
A/J	ENSMUSG00195047393	lncRNA gene	Chr4:104086409-104090075 (-)
AKR/J	ENSMUSG00220012451	lncRNA gene	Chr4:103472138-103475799 (-)
BALB/cJ	ENSMUSG00180048107	lncRNA gene	Chr4:102914888-102918553 (-)
C3H/HeJ	ENSMUSG00175042501	lncRNA gene	Chr4:103919280-103922945 (-)
C57BL/6NJ	ENSMUSG00215036606	lncRNA gene	Chr4:103824310-103827908 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005902	lincRNA gene	Chr4:100729571-100733128 (-)
CAST/EiJ	ENSTCUG00005023063	lncRNA gene	Chr4:103029225-103032856 (-)
CBA/J	ENSMUSG00210053202	lncRNA gene	Chr4:103552301-103555966 (-)
DBA/2J	ENSMUSG00185050481	lncRNA gene	Chr4:104263410-104267074 (-)
FVB/NJ	ENSMUSG00205043855	lncRNA gene	Chr4:102496761-102500426 (-)
JF1/MsJ	ENSUMUG00000047221	lncRNA gene	Chr4:104276745-104280427 (-)
LP/J	ENSMUSG00230009307	lncRNA gene	Chr4:107579747-107583412 (-)
NOD/ShiLtJ	ENSMUSG00190047322	lncRNA gene	Chr4:102922065-102925730 (-)
NZO/HlLtJ	ENSMUSG00225032841	lncRNA gene	Chr4:112681933-112685597 (-)
PWK/PhJ	ENSLUMG00010047314	lncRNA gene	Chr4:101991896-101995577 (-)
SPRET/EiJ	ENSMSPG00010031300	lncRNA gene	Chr4:104214286-104217945 (-)
WSB/EiJ	ENSIUOG00005045669	lncRNA gene	Chr4:103122948-103126548 (-)

Homology

• Gene Tree
  Gm17354
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm17354
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000091985 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091985	Ensembl Gene Model | MGI Sequence Detail	3599	C57BL/6J
transcript	ENSMUST00000170933	Ensembl | MGI Sequence Detail	3039	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm17354:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42734	Chr4:108495820-108495833 (-)	-1,189 bp