Trav5d-3 Pseudogene Detail

Summary

• Symbol
  Trav5d-3
• Name
  T cell receptor alpha variable 5D-3
• Synonyms
  Gm17342

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4936976
  NCBI Gene: 100101489
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53165777-53165989 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936976	pseudogenic gene segment	Chr14:53165777-53166058 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195025386	pseudogenic gene segment	Chr14:42201326-42201583 (+)
AKR/J	ENSMUSG00220032354	pseudogenic gene segment	Chr14:41649901-41650158 (-)
BALB/cJ	ENSMUSG00180053624	pseudogenic gene segment	Chr14:41823768-41824025 (+)
C3H/HeJ	ENSMUSG00175050862	pseudogenic gene segment	Chr14:43981842-43982235 (+)
C3H/HeJ	ENSMUSG00175050850	pseudogenic gene segment	Chr14:43506253-43506510 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210049501	pseudogenic gene segment	Chr14:42179513-42179770 (+)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205048627	pseudogenic gene segment	Chr14:41523619-41523888 (+)
JF1/MsJ	ENSUMUG00000053326	pseudogenic gene segment	Chr14:58959397-58959666 (+)
LP/J	ENSMUSG00230053497	pseudogenic gene segment	Chr14:59780310-59780579 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225052347	pseudogenic gene segment	Chr14:50078378-50078647 (+)
PWK/PhJ	ENSLUMG00010049643	pseudogenic gene segment	Chr14:41392554-41392811 (+)
SPRET/EiJ	ENSMSPG00010047460	pseudogenic gene segment	Chr14:45247753-45248022 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Trav5d-3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Trav5d-3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000105887 (Evidence)
• NCBI Gene
  100101489

Representative Sequences			Length	Strain/Species
genomic	100101489	NCBI Gene Model | MGI Sequence Detail	213	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61