Gm17300 Gene Detail

Summary

• Symbol
  Gm17300
• Name
  predicted gene, 17300

• Feature Type
  lncRNA gene
• IDs
  MGI:4936934
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:132079083-132080695 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 65.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936934	lncRNA gene	Chr4:132079083-132080695 (+)
129S1/SvImJ	ENSMUSG00200021014	lncRNA gene	Chr4:125533643-125535462 (+)
A/J	ENSMUSG00195046263	lncRNA gene	Chr4:126858191-126859801 (+)
AKR/J	ENSMUSG00220047360	lncRNA gene	Chr4:125849947-125851557 (+)
BALB/cJ	ENSMUSG00180049140	lncRNA gene	Chr4:124491956-124493566 (+)
C3H/HeJ	ENSMUSG00175049361	lncRNA gene	Chr4:125504350-125505960 (+)
C57BL/6NJ	ENSMUSG00215052429	lncRNA gene	Chr4:127008247-127009857 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005940	lincRNA gene	Chr4:121984102-121985737 (+)
CAST/EiJ	ENSTCUG00005047898	lncRNA gene	Chr4:126406933-126408540 (+)
CBA/J	ENSMUSG00210053933	lncRNA gene	Chr4:125133311-125134921 (+)
DBA/2J	ENSMUSG00185053306	lncRNA gene	Chr4:126665708-126667319 (+)
FVB/NJ	ENSMUSG00205047480	lncRNA gene	Chr4:124907006-124908617 (+)
JF1/MsJ	ENSUMUG00000046917	lncRNA gene	Chr4:127332212-127333819 (+)
LP/J	ENSMUSG00230038923	lncRNA gene	Chr4:130472126-130473945 (+)
NOD/ShiLtJ	ENSMUSG00190049645	lncRNA gene	Chr4:124898022-124899632 (+)
NZO/HlLtJ	ENSMUSG00225026708	lncRNA gene	Chr4:136376331-136377941 (+)
PWK/PhJ	ENSLUMG00010049967	lncRNA gene	Chr4:124351176-124352333 (+)
SPRET/EiJ	ENSMSPG00010044864	lncRNA gene	Chr4:126424514-126426134 (+)
WSB/EiJ	ENSIUOG00005044648	lncRNA gene	Chr4:124787383-124788993 (+)

Homology

• Gene Tree
  Gm17300
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm17300
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000091021 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091021	Ensembl Gene Model | MGI Sequence Detail	1613	C57BL/6J
transcript	ENSMUST00000172202	Ensembl | MGI Sequence Detail	1527	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm17300:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39371	Chr4:132079079-132079088 (+)	1 bp