Ndufab1-ps Pseudogene Detail

Summary

• Symbol
  Ndufab1-ps
• Name
  NADH:ubiquinone oxidoreductase subunit AB1b
• Synonyms
  Gm17257

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:4936891
  NCBI Gene: 102634451
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:80157535-80158002 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 45.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936891	pseudogene	Chr7:80156304-80158021 (+)
129S1/SvImJ	ENSMUSG00200035527	pseudogene	Chr7:66974443-66974854 (+)
A/J	ENSMUSG00195042622	pseudogene	Chr7:71386894-71387361 (+)
AKR/J	ENSMUSG00220038641	pseudogene	Chr7:64928919-64929386 (+)
BALB/cJ	ENSMUSG00180013717	pseudogene	Chr7:68112020-68112487 (+)
C3H/HeJ	ENSMUSG00175022490	pseudogene	Chr7:68886534-68886945 (+)
C57BL/6NJ	ENSMUSG00215034861	pseudogene	Chr7:67984056-67984523 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012252	pseudogene	Chr7:124211838-124221044 (-)
CAST/EiJ	ENSTCUG00005046330	pseudogene	Chr7:71435342-71435815 (+)
CBA/J	ENSMUSG00210024128	pseudogene	Chr7:68737758-68738169 (+)
DBA/2J	ENSMUSG00185047573	pseudogene	Chr7:73060559-73060970 (+)
FVB/NJ	ENSMUSG00205028113	pseudogene	Chr7:68620082-68620549 (+)
JF1/MsJ	ENSUMUG00000034749	pseudogene	Chr7:77722440-77722913 (+)
LP/J	ENSMUSG00230016657	pseudogene	Chr7:79150044-79150455 (+)
NOD/ShiLtJ	ENSMUSG00190020238	pseudogene	Chr7:68877753-68878164 (+)
NZO/HlLtJ	ENSMUSG00225042421	pseudogene	Chr7:77388951-77389418 (+)
PWK/PhJ	ENSLUMG00010018181	pseudogene	Chr7:67313717-67314190 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005023907	pseudogene	Chr7:69225919-69226384 (+)

Homology

• Gene Tree
  Ndufab1-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Ndufab1-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000091989 (Evidence)
• NCBI Gene
  102634451

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091989	Ensembl Gene Model | MGI Sequence Detail	468	C57BL/6J
transcript	ENSMUST00000166096	Ensembl | MGI Sequence Detail	468	Not Applicable
polypeptide	XP_036009503	RefSeq | MGI Sequence Detail	170	C57BL/6J

References

• Summaries
  All 16

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Ndufab1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67451	Chr7:80157525-80157529 (+)	-8 bp