Gm17249 Gene Detail

Summary

• Symbol
  Gm17249
• Name
  predicted gene, 17249

• Feature Type
  lncRNA gene
• IDs
  MGI:4936883
  NCBI Gene: 102637873
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:84456387-84458506 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4936883	lncRNA gene	Chr10:84454205-84458506 (-)
129S1/SvImJ	ENSMUSG00200051368	lncRNA gene	Chr10:80945013-80949250 (-)
A/J	ENSMUSG00195050395	lncRNA gene	Chr10:81379776-81384029 (-)
AKR/J	ENSMUSG00220049450	lncRNA gene	Chr10:80989333-80993586 (-)
BALB/cJ	ENSMUSG00180053407	lncRNA gene	Chr10:81390056-81394310 (-)
C3H/HeJ	ENSMUSG00175052793	lncRNA gene	Chr10:81266011-81270264 (-)
C57BL/6NJ	ENSMUSG00215053204	lncRNA gene	Chr10:80942238-80946475 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004659	lincRNA gene	Chr10:78416455-78419594 (-)
CAST/EiJ	ENSTCUG00005052042	lncRNA gene	Chr10:80717260-80721516 (-)
CBA/J	ENSMUSG00210050370	lncRNA gene	Chr10:81116720-81120974 (-)
DBA/2J	ENSMUSG00185054107	lncRNA gene	Chr10:81326232-81330485 (-)
FVB/NJ	ENSMUSG00205051954	lncRNA gene	Chr10:81043835-81048087 (-)
JF1/MsJ	ENSUMUG00000023974	lncRNA gene	Chr10:82706363-82710613 (-)
LP/J	ENSMUSG00230018970	lncRNA gene	Chr10:83228534-83232787 (-)
NOD/ShiLtJ	ENSMUSG00190052668	lncRNA gene	Chr10:81372735-81376988 (-)
NZO/HlLtJ	ENSMUSG00225053135	lncRNA gene	Chr10:87509452-87509837 (-)
PWK/PhJ	ENSLUMG00010051871	lncRNA gene	Chr10:81005966-81010216 (-)
SPRET/EiJ	ENSMSPG00010034958	lncRNA gene	Chr10:82421443-82425587 (-)
WSB/EiJ	ENSIUOG00005051851	lncRNA gene	Chr10:81084626-81088861 (-)

Homology

• Gene Tree
  Gm17249
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving Gm17249
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000097309 (Evidence)
• NCBI Gene
  102637873

Representative Sequences			Length	Strain/Species
genomic	102637873	NCBI Gene Model | MGI Sequence Detail	2120	C57BL/6J
transcript	AK134099	GenBank | ENA | DDBJ | MGI Sequence Detail	2512	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9