Dmrt1i Gene Detail

Summary

• Symbol
  Dmrt1i
• Name
  Dmrt1 interacting ncRNA
• Synonyms
  Dmr

• Feature Type
  lncRNA gene
• IDs
  MGI:4887388
  NCBI Gene: 100579137
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:144294733-144297815 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4887388	lncRNA gene	Chr5:144294733-144297862 (+)
129S1/SvImJ	ENSMUSG00200042237	lncRNA gene	Chr5:138144402-138147525 (+)
A/J	ENSMUSG00195046859	lncRNA gene	Chr5:137796806-137799929 (+)
AKR/J	ENSMUSG00220023392	lncRNA gene	Chr5:137021940-137025063 (+)
BALB/cJ	ENSMUSG00180035112	lncRNA gene	Chr5:137898826-137901949 (+)
C3H/HeJ	ENSMUSG00175049828	lncRNA gene	Chr5:139824287-139827410 (+)
C57BL/6NJ	ENSMUSG00215041930	lncRNA gene	Chr5:137744061-137747186 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034589	sense intronic lncRNA gene	Chr5:137054788-137057953 (+)
CAST/EiJ	ENSTCUG00005035534	lncRNA gene	Chr5:137170080-137173225 (+)
CBA/J	ENSMUSG00210024350	lncRNA gene	Chr5:138641070-138644193 (+)
DBA/2J	ENSMUSG00185041489	lncRNA gene	Chr5:141627180-141630303 (+)
FVB/NJ	ENSMUSG00205041987	lncRNA gene	Chr5:137451713-137454836 (+)
JF1/MsJ	ENSUMUG00000049766	lncRNA gene	Chr5:144504208-144507341 (+)
LP/J	ENSMUSG00230030019	lncRNA gene	Chr5:145748100-145751223 (+)
NOD/ShiLtJ	ENSMUSG00190046708	lncRNA gene	Chr5:137590439-137593562 (+)
NZO/HlLtJ	ENSMUSG00225009591	lncRNA gene	Chr5:153224677-153227800 (+)
PWK/PhJ	ENSLUMG00010020527	lncRNA gene	Chr5:136211732-136214877 (+)
SPRET/EiJ	ENSMSPG00010041292	lncRNA gene	Chr5:139811192-139814364 (+)
WSB/EiJ	ENSIUOG00005038628	lncRNA gene	Chr5:140126903-140130030 (+)

Homology

• Gene Tree
  Dmrt1i
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3
• UniProt
  3

• Ensembl
  ENSMUSG00000104600 (Evidence)
• NCBI Gene
  100579137

Representative Sequences			Length	Strain/Species
genomic	100579137	NCBI Gene Model | MGI Sequence Detail	3083	C57BL/6J
transcript	NR_102374	RefSeq | MGI Sequence Detail	675	ZRU/MplStud
polypeptide	E9LEA7	UniProt | EBI | MGI Sequence Detail	16	Not Applicable

Protein
Information

• UniProt
  3 Sequences

References

• Summaries
  All 8
• Earliest
  J:165584 Zhang L, et al., A novel ncRNA gene from mouse chromosome 5 trans-splices with Dmrt1 on chromosome 19. Biochem Biophys Res Commun. 2010 Oct 1;400(4):696-700
• Latest
  J:344890 Zhang L, et al., Meg8-DMR as the Secondary Regulatory Region Regulates the Expression of MicroRNAs While It Does Not Affect Embryonic Development in Mice. Genes (Basel). 2023 Jun 14;14(6)

TSS for Dmrt1i:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49707	Chr5:144295534-144295537 (+)	803 bp