Dmrt1i Gene Detail

Summary

• Symbol
  Dmrt1i
• Name
  Dmrt1 interacting ncRNA
• Synonyms
  Dmr

• Feature Type
  lncRNA gene
• IDs
  MGI:4887388
  NCBI Gene: 100579137
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:144294733-144297815 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4887388	lncRNA gene	Chr5:144294733-144297858 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037051	sense intronic lncRNA gene	Chr5:149697266-149700389 (+)
A/J	MGP_AJ_G0037039	sense intronic lncRNA gene	Chr5:143273880-143277003 (+)
AKR/J	MGP_AKRJ_G0036987	sense intronic lncRNA gene	Chr5:147733945-147737068 (+)
BALB/cJ	MGP_BALBcJ_G0037030	sense intronic lncRNA gene	Chr5:144537526-144540649 (+)
C3H/HeJ	MGP_C3HHeJ_G0036717	sense intronic lncRNA gene	Chr5:148578135-148581258 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037542	sense intronic lncRNA gene	Chr5:155170360-155173485 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034589	sense intronic lncRNA gene	Chr5:137054788-137057953 (+)
CAST/EiJ	MGP_CASTEiJ_G0035905	sense intronic lncRNA gene	Chr5:148108919-148112064 (+)
CBA/J	MGP_CBAJ_G0036692	sense intronic lncRNA gene	Chr5:161542502-161545625 (+)
DBA/2J	MGP_DBA2J_G0036867	sense intronic lncRNA gene	Chr5:143020056-143023179 (+)
FVB/NJ	MGP_FVBNJ_G0036817	sense intronic lncRNA gene	Chr5:142241964-142245087 (+)
LP/J	MGP_LPJ_G0036914	sense intronic lncRNA gene	Chr5:150300713-150303836 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036824	sense intronic lncRNA gene	Chr5:163900536-163903659 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037660	sense intronic lncRNA gene	Chr5:147639134-147642257 (+)
PWK/PhJ	MGP_PWKPhJ_G0035597	sense intronic lncRNA gene	Chr5:142135540-142138683 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035406	sense intronic lncRNA gene	Chr5:145373935-145377205 (+)
WSB/EiJ	MGP_WSBEiJ_G0036105	sense intronic lncRNA gene	Chr5:148428291-148431418 (+)

Homology

• Gene Tree
  Dmrt1i
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  3
• UniProt
  3

• Ensembl
  ENSMUSG00000104600 (Evidence)
• NCBI Gene
  100579137

Representative Sequences			Length	Strain/Species
genomic	100579137	NCBI Gene Model | MGI Sequence Detail	3083	C57BL/6J
transcript	NR_102374	RefSeq | MGI Sequence Detail	675	ZRU/MplStud
polypeptide	E9LEA9	UniProt | EBI | MGI Sequence Detail	16	Not Applicable

Protein
Information

• UniProt
  3 Sequences

References

• Summaries
  All 8

  Gene Ontology 1
• Earliest
  J:165584 Zhang L, et al., A novel ncRNA gene from mouse chromosome 5 trans-splices with Dmrt1 on chromosome 19. Biochem Biophys Res Commun. 2010 Oct 1;400(4):696-700
• Latest
  J:344890 Zhang L, et al., Meg8-DMR as the Secondary Regulatory Region Regulates the Expression of MicroRNAs While It Does Not Affect Embryonic Development in Mice. Genes (Basel). 2023 Jun 14;14(6)

TSS for Dmrt1i:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49707	Chr5:144295534-144295537 (+)	803 bp