Actc1dt Gene Detail

Summary

• Symbol
  Actc1dt
• Name
  actin, alpha, cardiac muscle 1 divergent transcript
• Synonyms
  C130080G10Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:4844008
  NCBI Gene: 100303644
• Alliance
  gene page
• Transcription Start Sites
  20 TSS

Location &
Maps

• Sequence Map
  Chr2:113884877-113891986 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 57.55 cM

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4844008	lncRNA gene	Chr2:113884816-113895349 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003617	antisense lncRNA gene	Chr2:116530423-116540810 (+)
A/J	MGP_AJ_G0003599	antisense lncRNA gene	Chr2:111798847-111820786 (+)
AKR/J	MGP_AKRJ_G0003577	antisense lncRNA gene	Chr2:114900395-114921198 (+)
BALB/cJ	MGP_BALBcJ_G0003588	antisense lncRNA gene	Chr2:112024496-112037688 (+)
C3H/HeJ	MGP_C3HHeJ_G0003535	antisense lncRNA gene	Chr2:115325631-115337019 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003727	antisense lncRNA gene	Chr2:120385579-120395976 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003235	antisense lncRNA gene	Chr2:106956363-106968705 (+)
CAST/EiJ	MGP_CASTEiJ_G0003498	antisense lncRNA gene	Chr2:115629713-115642483 (+)
CBA/J	MGP_CBAJ_G0003532	antisense lncRNA gene	Chr2:124603391-124615762 (+)
DBA/2J	MGP_DBA2J_G0003540	antisense lncRNA gene	Chr2:111244946-111255896 (+)
FVB/NJ	MGP_FVBNJ_G0003560	antisense lncRNA gene	Chr2:110101524-110116915 (+)
LP/J	MGP_LPJ_G0003617	antisense lncRNA gene	Chr2:116832879-116847638 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003548	antisense lncRNA gene	Chr2:128979566-128993905 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003728	antisense lncRNA gene	Chr2:114974666-114988928 (+)
PWK/PhJ	MGP_PWKPhJ_G0003453	antisense lncRNA gene	Chr2:110761024-110772389 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003396	antisense lncRNA gene	Chr2:114132284-114146809 (+)
WSB/EiJ	MGP_WSBEiJ_G0003532	antisense lncRNA gene	Chr2:115799090-115810491 (+)

Homology

• Gene Tree
  Actc1dt
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Actc1dt
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000092397 (Evidence)
• NCBI Gene
  100303644

Representative Sequences			Length	Strain/Species
genomic	100303644	NCBI Gene Model | MGI Sequence Detail	7110	C57BL/6J
transcript	NR_028422	RefSeq | MGI Sequence Detail	1909	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:297375 Ponnusamy M, et al., Long Noncoding RNA CPR (Cardiomyocyte Proliferation Regulator) Regulates Cardiomyocyte Proliferation and Cardiac Repair. Circulation. 2019 Jun 4;139(23):2668-2684

TSS for Actc1dt:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19440	Chr2:113884777-113884784 (+)	-96 bp
Tssr19441	Chr2:113884810-113884821 (+)	-61 bp
Tssr19442	Chr2:113884825-113884834 (+)	-47 bp
Tssr19443	Chr2:113884843-113884866 (+)	-22 bp
Tssr19444	Chr2:113884872-113884896 (+)	7 bp
Tssr19445	Chr2:113884897-113884942 (+)	43 bp
Tssr19446	Chr2:113885115-113885126 (+)	244 bp
Tssr19447	Chr2:113885330-113885341 (+)	459 bp
Tssr19448	Chr2:113885616-113885625 (+)	744 bp
Tssr19449	Chr2:113885630-113885642 (+)	759 bp
Tssr19450	Chr2:113885643-113885663 (+)	776 bp
Tssr19451	Chr2:113885671-113885690 (+)	804 bp
Tssr19452	Chr2:113885699-113885708 (+)	827 bp
Tssr603	Chr2:113885737-113885747 (+)	865 bp
Tssr19453	Chr2:113885751-113885768 (+)	883 bp
Tssr19454	Chr2:113885779-113885793 (+)	909 bp
Tssr19455	Chr2:113885805-113885808 (+)	930 bp
Tssr19456	Chr2:113886765-113886809 (+)	1,910 bp
Tssr19457	Chr2:113891644-113891657 (+)	6,774 bp
Tssr19458	Chr2:113891665-113891676 (+)	6,794 bp