Traj17 Gene Detail

Summary

• Symbol
  Traj17
• Name
  T cell receptor alpha joining 17
• Synonyms
  Gm17010

• Feature Type
  gene segment
• IDs
  MGI:4440523
  NCBI Gene: 100124372
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54439232-54439294 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4440523	gene segment	Chr14:54439232-54439294 (+)
129S1/SvImJ	ENSMUSG00200044072	gene segment	Chr14:43031447-43031509 (+)
A/J	ENSMUSG00195037474	gene segment	Chr14:43255721-43255783 (+)
AKR/J	ENSMUSG00220035841	gene segment	Chr14:42583662-42583724 (+)
BALB/cJ	ENSMUSG00180052339	gene segment	Chr14:42879485-42879547 (+)
C3H/HeJ	ENSMUSG00175052367	gene segment	Chr14:44561926-44561988 (+)
C57BL/6NJ	ENSMUSG00215050208	gene segment	Chr14:42761532-42761594 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002166	gene segment	Chr14:45634687-45634749 (+)
CAST/EiJ	ENSTCUG00005050139	gene segment	Chr14:44558049-44558111 (+)
CBA/J	ENSMUSG00210048563	gene segment	Chr14:43242490-43242552 (+)
DBA/2J	ENSMUSG00185054981	gene segment	Chr14:48283179-48283241 (+)
FVB/NJ	ENSMUSG00205048269	gene segment	Chr14:42625416-42625478 (+)
JF1/MsJ	ENSUMUG00000055142	gene segment	Chr14:59541724-59541786 (+)
LP/J	ENSMUSG00230053175	gene segment	Chr14:60397441-60397503 (+)
NOD/ShiLtJ	ENSMUSG00190047029	gene segment	Chr14:42986239-42986301 (+)
NZO/HlLtJ	ENSMUSG00225051473	gene segment	Chr14:50695530-50695592 (+)
PWK/PhJ	ENSLUMG00010052447	gene segment	Chr14:42465548-42465610 (+)
SPRET/EiJ	ENSMSPG00010048619	gene segment	Chr14:45856293-45856355 (+)
WSB/EiJ	ENSIUOG00005045978	gene segment	Chr14:42457273-42457335 (+)

Homology

• Human Ortholog
  TRAJ17, T cell receptor alpha joining 17

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAJ17, T cell receptor alpha joining 17
  
• Links
  HGNC:12045

  NCBI Gene ID: 28738

  
  
• Chr Location
  14q11.2; chr14:22526844-22526906 (+)  GRCh38

---

• MGI Vertebrate Homology
  Traj17 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAJ17
• Gene Tree
  Traj17
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj17
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076912 (Evidence)
• NCBI Gene
  100124372

Representative Sequences			Length	Strain/Species
genomic	100124372	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
polypeptide	A0A0G2JEC1	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61